Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1191 89.7 4e-13 >seq1191 Length=772852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20434 TTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGA 20493 || |||||| ||| ||| || || || ||| | || ||| |||| |||||||||||| Sbjct 254506 TTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGGGA 254565 Query 20494 CTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 || ||||| |||||||| ||||| |||||| | || || || | ||||| || ||||| Sbjct 254566 CTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATGTA 254625 Query 20554 AC 20555 || Sbjct 254626 AC 254627 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20434 TTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGA 20493 || |||||| ||| ||| || || || ||| | || ||| |||| |||||||||||| Sbjct 255758 TTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGGGA 255817 Query 20494 CTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 || ||||| |||||||| ||||| |||||| | || || || | ||||| || ||||| Sbjct 255818 CTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATGTA 255877 Query 20554 AC 20555 || Sbjct 255878 AC 255879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399177811650040