Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq964 109 5e-19 >seq964 Length=50745 Score = 109 bits (120), Expect = 5e-19 Identities = 306/459 (67%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 121521 TTATGTACCTGGAAAAAGAGGTTGG-TTAAAGATGAAGAAGGATTACTTAGATG-ATGGA 121578 ||||| ||| ||||| || |||| |||||| |||||||||| || || ||| | ||| Sbjct 24282 TTATGAACCAGGAAAGCGACATTGGCTTAAAG-TGAAGAAGGACTATCTA-ATGCAGGGA 24225 Query 121579 TCCATGGCAGATTCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAG 121638 ||||| ||| | || || |||||||| | || | || || || | || || Sbjct 24224 CAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTGCTTACTATGGGACTGGCAGCAAA 24165 Query 121639 GGTGGTGCGCCATCAATATTTTTAATGGGGTGCTATGATAATGAAAGTAATAAT--TGGA 121696 ||||| | || | || | |||||| |||||| | |||| | || ||| Sbjct 24164 GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTATGATGA--AAAGCGAGAACGCTGGT 24107 Query 121697 AAACGGTAACTAAATGCTC---TGGCCACGACGATGACACATTaaaaaaagtacaaaaag 121753 ||||| |||||| | ||| || || ||||| ||||| | || || | ||| Sbjct 24106 GTACGGTTACTAAAGTCGGGAATGGACATGATGATGAGACATTGGAGAAGATAAACAAAC 24047 Query 121754 aaatagagtttttaaaaattagtaaagatacaaaaaaaatcccaaaaTGGTTAATAGTAG 121813 || | | || ||||| || ||||||| || | | | ||||| ||||| | | Sbjct 24046 AACTGAAAGTTGAGAAAATAAGCAAAGATATGAAGAGAGTACCAAAGTGGTTGAATTTGA 23987 Query 121814 ATAAAATATATTATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTGTGGGAAA 121873 |||||| || |||||||| || || ||| ||||| || ||| |||||||||| Sbjct 23986 ATAAAAATCATGTCCCAGATTTGGTTGTAGCTGACCCAAAGAATGCACCAGTGTGGGAAA 23927 Query 121874 TATCGGGATCTAGTTTTACAAAATC-GATACATCACACAGCAGATGGGATTTCGATAAGA 121932 | |||| || || ||| |||| || | ||| || ||||| || ||||| |||||| Sbjct 23926 TCACGGGTACTGAGTTCACACAATCAGAGTC-TCATACTGCAGAGGGAATTTCTATAAGA 23868 Query 121933 TTTCCTAGATTTaaaaaaaTTAGATATGATAAAAATTGG 121971 ||||| ||| ||| || |||||| ||||| || ||| Sbjct 23867 TTTCCCAGAGTTACCAAGATTAGAAGGGATAAGAACTGG 23829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482337930704960