Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq964 129 7e-25 seq1212 127 3e-24 >seq964 Length=50745 Score = 129 bits (142), Expect = 7e-25 Identities = 326/487 (67%), Gaps = 13/487 (3%) Strand=Plus/Minus Query 155789 TGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 155848 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 155849 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 155908 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 155909 CCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACG 155968 | |||||||| | || | || ||||| || ||| | || || || ||||| ||| | Sbjct 24187 CTTACTATGGGACTGGCAGCAAAGGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTATG 24128 Query 155969 ACGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCCGGTCACGATGATAA 156023 | || || || || ||| ||||| |||||| | || || |||||| | Sbjct 24127 ATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATGA 24070 Query 156024 TACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCaaa 156081 || || | | | ||| || | | || | | | ||||| | ||| ||| || Sbjct 24069 GACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAAG 24012 Query 156082 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGATGAT 156141 | | | ||| |||||||| | ||||||| || | || ||||| || |||| ||| Sbjct 24011 AGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA- 23953 Query 156142 CCGAAACAAT-CTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCACA 156200 || ||| ||| | | | |||||||| | || | ||||| ||| || |||| || Sbjct 23952 CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTCA 23893 Query 156201 TACAGCGAATGGAATATCAATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAAC 156260 ||| || | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23892 TACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGAA 23833 Query 156261 GTGGAAA 156267 |||||| Sbjct 23832 CTGGAAA 23826 >seq1212 Length=378467 Score = 127 bits (140), Expect = 3e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| || || || ||| || ||||| ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 33724 CAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 33780 |||||| || ||| |||| | | || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 |||||||| ||||| |||| || || || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 34140 TATTGGATTGGGAAAATAACAAA 34162 || || || || ||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 33824 ATAGtttt--tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 ||||||| |||||| | ||||| ||| ||| || | ||| | || |||||| || Sbjct 239561 ATAGTTTACCTTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCA 239620 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 ||||| || || ||||| || ||||||||||| |||||| |||| ||||| || || || Sbjct 239621 GAATGTATATTCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGA 239680 Query 33942 ACTTC 33946 ||||| Sbjct 239681 ACTTC 239685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807585900160