Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1212 82.4 7e-11 >seq1212 Length=378467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11889 TATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAG 11948 ||||||| | |||||| | |||| || |||||| || ||||| ||||| || |||| Sbjct 239580 TATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCAGAATGTATATTCTCAATAG 239639 Query 11949 CTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 | || ||||||||||||||| ||| |||||||| Sbjct 239640 CAATCTGAAATCCATAGAAAAATCTTGCCTCTG 239672 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 12128 ACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187 || |||||||| |||||||| |||| ||| | |||||||||| ||||||||||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 12188 TACTTAATAGGGAAAATAACGAA 12210 |||| ||| || ||||| ||||| Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468517350455680