Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq964 149 8e-31 seq1212 132 6e-26 >seq964 Length=50745 Score = 149 bits (164), Expect = 8e-31 Identities = 332/489 (68%), Gaps = 17/489 (3%) Strand=Plus/Minus Query 158980 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 159039 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 159040 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 159099 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 159100 CTTACTATGGTAAAGG-ATCAAAGGGTGGTATTATGGCAGTCTTTTTAATGGGTTGTTAC 159158 |||||||||| | || | |||| ||||| || ||| | || || | ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 159159 GATGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCAGGACACGATGATA 159213 ||||| || || || ||| ||||| |||||| | ||||| |||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 159214 ATACGTTAAGGGTTTTGCAAGACCAATTAATGATGGTT---AAAATTAACAAGGATCCCa 159270 | || || || | | || || | ||| ||| ||||| | ||| ||| | Sbjct 24070 AGACATT---GGAGAAGATAAACAAACAACTGAAAGTTGAGAAAATAAGCAAAGATATGA 24014 Query 159271 aaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGG 159330 | | | | ||| |||||||| | ||||||| || | || ||||| || |||| | Sbjct 24013 AGAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTG 23954 Query 159331 ATCCGAAACAAT-CTCAAATATGGGAAATTTCAGGAACAGAGTTTACATCTTCCAAGTCA 159389 | || ||| ||| | | | | |||||||| | || || ||||| ||| || |||| Sbjct 23953 A-CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCT 23895 Query 159390 CATACAGCAAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAA 159449 ||||| ||| | ||||| || || |||||||| ||| |||| | ||||||| ||||| Sbjct 23894 CATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAG 23835 Query 159450 ACGTGGAAA 159458 | |||||| Sbjct 23834 AACTGGAAA 23826 >seq1212 Length=378467 Score = 132 bits (146), Expect = 6e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || |||| ||||| || || || || || ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 36300 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 |||||| || ||| |||| | || || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 |||||||| ||||| |||| ||||| || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 100 bits (110), Expect = 4e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 36716 TATTGAATTGGAAAAATAACAAA 36738 || ||||| |||||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162335052480