Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1158 120 3e-22 >seq1158 Length=770266 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 337689 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 337748 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| ||||| |||||||| |||| |||||||||||||| ||||| Sbjct 337749 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 337808 Query 139658 ATGCCT 139663 || ||| Sbjct 337809 ATTCCT 337814 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 338122 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 338181 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| ||||| |||||||| |||| |||||||||||||| ||||| Sbjct 338182 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 338241 Query 139658 ATGCCT 139663 || ||| Sbjct 338242 ATTCCT 338247 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 340692 CCTCCTCTGAGACGAAGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 340751 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 340752 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 340811 Query 139658 ATGCCT 139663 || ||| Sbjct 340812 ATTCCT 340817 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| |||||||| || || ||||| ||||||||| Sbjct 337331 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 337390 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| ||||| ||||||||| |||| |||||||||||||| || || Sbjct 337391 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 337450 Query 139658 ATGCCT 139663 || ||| Sbjct 337451 ATTCCT 337456 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 338565 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 338624 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 338625 AGTGTACGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 338684 Query 139658 ATGCCT 139663 || ||| Sbjct 338685 ATTCCT 338690 Score = 109 bits (120), Expect = 5e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 341050 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 341109 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 341110 AGTGTACGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGG 341168 Query 139657 TATGCCT 139663 || ||| Sbjct 341169 GATTCCT 341175 Score = 109 bits (120), Expect = 5e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| ||||||||||| || ||||| ||||||||| Sbjct 341853 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 341912 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 341913 AGTGTGCGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGG 341971 Query 139657 TATGCCT 139663 || ||| Sbjct 341972 GATTCCT 341978 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| || |||||||| || ||||| ||||||||| Sbjct 339090 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTC 339149 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 339150 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 339209 Query 139658 ATGCCT 139663 || ||| Sbjct 339210 ATTCCT 339215 Score = 105 bits (116), Expect = 7e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| ||||||||||| || ||||| ||||||||| Sbjct 341409 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 341468 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 341469 AGTGTACGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGG 341527 Query 139657 TATGCCT 139663 || ||| Sbjct 341528 AATTCCT 341534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056112582400