Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq964 150 3e-31 seq1212 136 6e-27 seq2 84.2 3e-11 >seq964 Length=50745 Score = 150 bits (166), Expect = 3e-31 Identities = 331/487 (68%), Gaps = 13/487 (3%) Strand=Plus/Minus Query 174228 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 174287 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 174288 AGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAGTACTAGGTG 174347 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 174348 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTAC 174406 |||||||||| | || |||||| ||||| || ||| | || || || ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 174407 GACGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCCGGACACGATGATA 174461 || || || || || ||| ||||| |||||| | ||||| |||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 174462 ATACGTT--AAGAGTTTTGCAAGACCAATTAAAGATGATTAAAATTAACAAGGATCCCaa 174519 | || || | || | ||| || | | |||| ||| ||||| | ||| ||| || Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAGTTGA-GAAAATAAGCAAAGATATGAA 24013 Query 174520 aaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 174579 | | | ||| |||||||| | ||||||| || | || ||||| || |||| || Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953 Query 174580 TCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCACA 174639 ||||| | | | | |||||||| | || | ||||| ||| || |||| || Sbjct 23952 CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTCA 23893 Query 174640 TACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAAC 174699 ||| || | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23892 TACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGAA 23833 Query 174700 GTGGAAA 174706 |||||| Sbjct 23832 CTGGAAA 23826 >seq1212 Length=378467 Score = 136 bits (150), Expect = 6e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| || || || ||||| ||||| || | |||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 ||| || || ||| |||| | | | || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 |||||||| ||||| |||| || || || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 50518 TATTGGATTGGGAAAATAACAAA 50540 || || || || ||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 50202 ATAGtttt--tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 ||||||| |||||| | ||||| ||| ||| || | ||| | || |||||| || Sbjct 239561 ATAGTTTACCTTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCA 239620 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| || || ||||| || ||||||||||| |||||| |||| ||||| || || || Sbjct 239621 GAATGTATATTCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGA 239680 Query 50320 ACTT-CTGTACAAAATCGTTCA 50340 |||| |||| | |||| |||| Sbjct 239681 ACTTCCTGTGC-GAATCTTTCA 239701 >seq2 Length=7758925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || |||||||||| ||||| ||||||| |||| | || || |||||||| || | Sbjct 5568497 TCCAGCCAAAGAAATGCATGCTCGTAAGTTTGGCATAATTAGGTTCAGCTATATGTATGT 5568556 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | | ||| ||||| || || || || | | || ||||||||||| | || ||| Sbjct 5568557 TGAGACTTTGGCTTTGGTCAATAAAAGCAGCACGATCAGCAGCCATTTTGACAATATTCT 5568616 Query 78905 TTTGTGGAATTTCCCA 78920 | || | |||||||| Sbjct 5568617 TCTGGGAGATTTCCCA 5568632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257379526080