Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq964 102 8e-17 >seq964 Length=50745 Score = 102 bits (112), Expect = 8e-17 Identities = 302/458 (66%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 121072 TTATGTACCTGGAAAAAGAGGTTGG-TTAAAGATGAAGAAGGATTACTTAGATG-ATGGA 121129 ||||| ||| ||||| || |||| |||||| |||||||||| || || ||| | ||| Sbjct 24282 TTATGAACCAGGAAAGCGACATTGGCTTAAAG-TGAAGAAGGACTATCTA-ATGCAGGGA 24225 Query 121130 TCCATGGCAGATTCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAG 121189 ||||| ||| | || || |||||||| | || | || || || | || || Sbjct 24224 CAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTGCTTACTATGGGACTGGCAGCAAA 24165 Query 121190 GGTGGTACACCATCAATATTTTTAATGGGGTGTTATGATAATGAAAGTAATAAT--TGGA 121247 ||||| | || | || | |||||| ||||||| | |||| | || ||| Sbjct 24164 GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTATGATGA--AAAGCGAGAACGCTGGT 24107 Query 121248 AAACTGTAACTAAATGCTCC---GGACACAACGATGACACATtaaaaaaagtacaaaaag 121304 || || |||||| | ||||| | ||||| ||||| | || || | ||| Sbjct 24106 GTACGGTTACTAAAGTCGGGAATGGACATGATGATGAGACATTGGAGAAGATAAACAAAC 24047 Query 121305 aaataaagtttttaaaaattagtaaagatacaaaaaaaatcccaaaaTGGTTAATAGTAA 121364 || | || || ||||| || ||||||| || | | | ||||| ||||| | | | Sbjct 24046 AACTGAAAGTTGAGAAAATAAGCAAAGATATGAAGAGAGTACCAAAGTGGTTGAATTTGA 23987 Query 121365 ATAAAATATATTATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTATGGGAAA 121424 |||||| || |||||||| || || ||| ||||| || ||| || ||||||| Sbjct 23986 ATAAAAATCATGTCCCAGATTTGGTTGTAGCTGACCCAAAGAATGCACCAGTGTGGGAAA 23927 Query 121425 TATCCGGATCTAGTTTTACAAAATCTATACATCACACAGCAGATGGTATTTCAATAAGAT 121484 | | || || || ||| |||| ||| || ||||| || ||||| ||||||| Sbjct 23926 TCACGGGTACTGAGTTCACACAATCAGAGTCTCATACTGCAGAGGGAATTTCTATAAGAT 23867 Query 121485 TTCCTAGATTTaaaaaaaTTAGATATGATAAAAATTGG 121522 |||| ||| ||| || |||||| ||||| || ||| Sbjct 23866 TTCCCAGAGTTACCAAGATTAGAAGGGATAAGAACTGG 23829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720372324800