Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq964 107 2e-18 >seq964 Length=50745 Score = 107 bits (118), Expect = 2e-18 Identities = 310/469 (66%), Gaps = 11/469 (2%) Strand=Plus/Minus Query 120786 TTATGTACCTGGAAAAAGAGGTTGG-TTAAAGATGAAGAAGGATTACTTAAATGATGGAT 120844 ||||| ||| ||||| || |||| |||||| |||||||||| || ||| | ||| Sbjct 24282 TTATGAACCAGGAAAGCGACATTGGCTTAAAG-TGAAGAAGGACTATCTAATGCAGGGAC 24224 Query 120845 CCATGGCAGATTCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGCTCTAAGG 120904 ||||| ||| | || || |||||||| | || | || || || | ||| || | Sbjct 24223 AGATGGCGGATACCGCTGATTTAGTAGTACTGGGTGCTTACTATGGGACTGGCAGCAAAG 24164 Query 120905 GTGGCACACCATCGATATTTTTAATGGGGTGCTATGATAATGAAAGTAATAAT--TGGAA 120962 |||| | || | || | |||||| |||||| | |||| | || ||| Sbjct 24163 GTGGAATGATGTCTGTGTTCCTGATGGGGGTTTATGATGA--AAAGCGAGAACGCTGGTG 24106 Query 120963 AACAGTAACTAAATGCTCC---GGCCACGACGATGACACATTaaaaaaagtacaaaaaga 121019 || || |||||| | || || || ||||| ||||| | || || | ||| | Sbjct 24105 TACGGTTACTAAAGTCGGGAATGGACATGATGATGAGACATTGGAGAAGATAAACAAACA 24046 Query 121020 aatagagtttttaaaaattagtaaagatacaaaaaaaatcccaaaaTGGTTAATAGTAGA 121079 | | | || ||||| || ||||||| || | | | ||||| ||||| | | | Sbjct 24045 ACTGAAAGTTGAGAAAATAAGCAAAGATATGAAGAGAGTACCAAAGTGGTTGAATTTGAA 23986 Query 121080 TAAAATATATTATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTGTGGGAAAT 121139 ||||| || |||||||| || || ||| ||||| || ||| ||||||||||| Sbjct 23985 TAAAAATCATGTCCCAGATTTGGTTGTAGCTGACCCAAAGAATGCACCAGTGTGGGAAAT 23926 Query 121140 ATCGGGATCTAGTTTTACAAAATC-GATACATCACACAGCAGATGGGATTTCGATAAGAT 121198 |||| || || ||| |||| || | ||| || ||||| || ||||| ||||||| Sbjct 23925 CACGGGTACTGAGTTCACACAATCAGAGTC-TCATACTGCAGAGGGAATTTCTATAAGAT 23867 Query 121199 TTCCTAGATTTaaaaaaaTTAGATATGATAAAAATTGGTTATCAGCTAC 121247 |||| ||| ||| || |||||| ||||| || ||| | |||| || Sbjct 23866 TTCCCAGAGTTACCAAGATTAGAAGGGATAAGAACTGGAAAACAGCAAC 23818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581190438080