Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq964 141 1e-28 seq1212 132 6e-26 >seq964 Length=50745 Score = 141 bits (156), Expect = 1e-28 Identities = 329/487 (68%), Gaps = 13/487 (3%) Strand=Plus/Minus Query 165577 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 165636 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 165637 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 165696 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 165697 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTAC 165755 |||||||||| | || |||||| ||||| || ||| | || || || ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 165756 GACGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCCGGCCACGATGATA 165810 || || || || || ||| ||||| |||||| | || || |||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 165811 ATACGTT--AAGGGTTTTACAAGACCAATTAAAGATGGTTAAAATTAACAAGGATCCCaa 165868 | || || | | | |||| || | | |||| | | ||||| | ||| ||| || Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAA 24013 Query 165869 aaaaaTTCCAGTGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 165928 | | | ||| ||||||| | ||||||| || | || ||||| || |||| || Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953 Query 165929 TCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACGTCTTCAAAGTCACA 165988 ||||| | | | | |||||||| | || | ||||| || ||| |||| || Sbjct 23952 CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTCA 23893 Query 165989 TACAGCAAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAAC 166048 ||| ||| | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23892 TACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGAA 23833 Query 166049 GTGGAAA 166055 |||||| Sbjct 23832 CTGGAAA 23826 >seq1212 Length=378467 Score = 132 bits (146), Expect = 6e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | ||||| || || || ||||| ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 |||||| || ||| |||| | || || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 |||||||| ||||| |||| || || || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 96.9 bits (106), Expect = 5e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || ||||| || |||||||||||||| |||||||| |||||||| | ||||||||||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 42623 TATTGAATTGGGAAAATAACAAA 42645 || ||||| || ||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 42307 ATAGtttt--tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 ||||||| |||||| | ||||| ||| |||||| | ||| | || |||||| || Sbjct 239561 ATAGTTTACCTTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCA 239620 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 ||||| || || ||||| || ||||||||||| |||||| |||| ||||| || | || Sbjct 239621 GAATGTATATTCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGA 239680 Query 42425 ACTT-CTGTACAAAATCGTTCA 42445 |||| |||| | |||| |||| Sbjct 239681 ACTTCCTGTGC-GAATCTTTCA 239701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128528886720