Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1158 114 1e-20 >seq1158 Length=770266 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| |||||||| ||||||||||||||| Sbjct 337689 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 337748 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || |||||||| |||| |||||||||||||| ||||| Sbjct 337749 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 337808 Query 143078 ATGCCT 143083 || ||| Sbjct 337809 ATTCCT 337814 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| |||||||| ||||||||||||||| Sbjct 338122 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 338181 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || |||||||| |||| |||||||||||||| ||||| Sbjct 338182 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 338241 Query 143078 ATGCCT 143083 || ||| Sbjct 338242 ATTCCT 338247 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | |||||| |||| ||||| ||||| || ||||||||||||||| Sbjct 340692 CCTCCTCTGAGACGAAGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 340751 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || |||||||| |||| |||||||||||||| || || Sbjct 340752 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 340811 Query 143078 ATGCCT 143083 || ||| Sbjct 340812 ATTCCT 340817 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| || || || ||||||||||||||| Sbjct 337331 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 337390 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || ||||||||| |||| |||||||||||||| || || Sbjct 337391 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 337450 Query 143078 ATGCCT 143083 || ||| Sbjct 337451 ATTCCT 337456 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| |||||||| ||||||||||||||| Sbjct 338565 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 338624 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||| || || |||||||| |||| |||||||||||||| || || Sbjct 338625 AGTGTACGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 338684 Query 143078 ATGCCT 143083 || ||| Sbjct 338685 ATTCCT 338690 Score = 105 bits (116), Expect = 7e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| |||||||| ||||||||||||||| Sbjct 341050 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 341109 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| || || |||||||| |||| |||||||||||||| || || Sbjct 341110 AGTGTACGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGG 341168 Query 143077 TATGCCT 143083 || ||| Sbjct 341169 GATTCCT 341175 Score = 105 bits (116), Expect = 7e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| ||||| || ||||||||||||||| Sbjct 341853 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 341912 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| || || |||||||| |||| |||||||||||||| || || Sbjct 341913 AGTGTGCGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGG 341971 Query 143077 TATGCCT 143083 || ||| Sbjct 341972 GATTCCT 341978 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| || || ||||| || ||||||||||||||| Sbjct 339090 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTC 339149 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || |||||||| |||| |||||||||||||| || || Sbjct 339150 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 339209 Query 143078 ATGCCT 143083 || ||| Sbjct 339210 ATTCCT 339215 Score = 100 bits (110), Expect = 3e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| ||||| ||||| || ||||||||||||||| Sbjct 341409 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 341468 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| || || |||||||| |||| |||||||||||||| || || Sbjct 341469 AGTGTACGTCCA-TCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGG 341527 Query 143077 TATGCCT 143083 || ||| Sbjct 341528 AATTCCT 341534 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| || || ||||| || ||||||||||||||| Sbjct 340246 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTC 340305 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || || |||||||| |||| |||||||| ||||| || || Sbjct 340306 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGA 340365 Query 143078 ATGCCT 143083 || ||| Sbjct 340366 ATTCCT 340371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006338471040