Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 1e-12 >seq10 Length=4880875 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| | || | ||||| ||||| ||||| || ||||||||||| || Sbjct 829582 CCTCCTCTCAATCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTC 829523 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | ||||| | ||| ||||||||| | ||||| | |||||| || ||| Sbjct 829522 AAAGTTCGTCCATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGGA 829463 Query 15257 ATTCCT 15262 |||||| Sbjct 829462 ATTCCT 829457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173585316952