Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1212 93.3 1e-13 seq969 86.0 1e-11 seq10 84.2 5e-11 >seq1212 Length=378467 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 ||||||||||| |||| ||||| || || || || || |||||||| ||||| |||| Sbjct 239212 TTGCTTTTGCCTCTGTTGAAGGCATCTTTTTCAGCGGTTCCTTTGCCGCCATCTTCTGGT 239153 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 |||| || |||| || ||||| ||| | ||||| || || ||| |||| ||||| || | Sbjct 239152 TGAAAAAGCGAGGTCTGATGCCCGGACTCACTTTTTCAAATGAACTGATTAGCAGAGATG 239093 Query 269259 A 269259 | Sbjct 239092 A 239092 >seq969 Length=46047 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 206200 AACGGAAATAGGTAAAGTAATAAACAGTTACTTGGAAAAGAAAATAAATATCAACGACCG 206259 ||| || || |||||| || ||||| || |||| |||||| ||| | | || || Sbjct 11090 AACAGAGATTGGTAAAACCATCAACAGCTATTTGGTGAAGAAATCCAATTTAGATGATCG 11149 Query 206260 TGCTATACATCTCTTATTTTCCGCTAATAGATGGGAGTTAGCTGATCTAA----TTA-AA 206314 ||||| ||||| ||||||||||| ||| |||||||| ||| ||||| | ||| || Sbjct 11150 AGCTATTCATCTGTTATTTTCCGCCAATCGATGGGAG-AAGC-GATCTGAAATGTTACAA 11207 Query 206315 GATAAACTAAGTCATAATATTAATTTAATAGTAGATAGATACGCTTTTTCTGGAGCTGCG 206374 ||| |||| | || ||| | | || || || ||||| |||| ||||| ||||| Sbjct 11208 GAT---CTAAATGATGGAGTTACTCTCATTGTGGACAGATATGCTTACTCTGGTGCTGCA 11264 Query 206375 TTTACTGCGGCTAAAAA 206391 ||| |||| || || || Sbjct 11265 TTTTCTGCTGCAAAGAA 11281 >seq10 Length=4880875 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || || || | || ||||||||||| || || || ||| Sbjct 829582 CCTCCTCTCAATCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTC 829523 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||| ||||| || ||||| || || | || |||||||||||||| Sbjct 829522 AAAGTTCGTCCATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGGA 829463 Query 104453 ATTCCT 104458 |||||| Sbjct 829462 ATTCCT 829457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151379635084576