Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq57 84.2 2e-11 >seq57 Length=81022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 5377 GAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCC 5436 ||| |||||||| | ||||| ||||| ||||| || |||| ||| ||||| || || || Sbjct 10700 GAAATTAAACAGAATAACCCCAACATTCCCTCGATAATCTTGGTCTATAACCCCGGCCCC 10641 Query 5437 CACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACC 5496 ||| || || || |||||| | ||| || || | ||| || | || ||||||||||| Sbjct 10640 CACATCAATGAAATGTTTGTGGGTAAGTCCCGATCTTGGGGCAACACGACCGTAGCAACC 10581 Query 5497 AGGTGGGAG 5505 | ||||| Sbjct 10580 ATCAGGGAG 10572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447743280768640