Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 2e-14 seq214 91.5 8e-14 seq12 91.5 8e-14 seq9 91.5 8e-14 seq221 87.8 9e-13 seq10 87.8 9e-13 >seq1 Length=10041005 Score = 93.3 bits (102), Expect = 2e-14 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 555442 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 555383 Query 11528 CCGTCGAC 11535 ||| |||| Sbjct 555382 CCGACGAC 555375 >seq214 Length=10394 Score = 91.5 bits (100), Expect = 8e-14 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 7549 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 7608 Query 11528 CCGTCGA 11534 ||| ||| Sbjct 7609 CCGACGA 7615 >seq12 Length=5356124 Score = 91.5 bits (100), Expect = 8e-14 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 5313078 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 5313019 Query 11528 CCGTCGA 11534 ||| ||| Sbjct 5313018 CCGACGA 5313012 >seq9 Length=6586237 Score = 91.5 bits (100), Expect = 8e-14 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 617537 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 617596 Query 11528 CCGTCGA 11534 ||| ||| Sbjct 617597 CCGACGA 617603 >seq221 Length=11663 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 9009 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 8950 Query 11528 CC 11529 || Sbjct 8949 CC 8948 >seq10 Length=4880875 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 2962356 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 2962297 Query 11528 CC 11529 || Sbjct 2962296 CC 2962295 Lambda K H 0.641 0.410 0.924 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487146232672