Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1158 84.2 2e-11 >seq1158 Length=770266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||||| | || | |||||||| | |||||| || ||||| | Sbjct 338109 AAAAATTTGCATTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGAT 338168 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||||||| ||| || || ||||| || || | ||||| | | ||| Sbjct 338169 GTTGTAATCGCTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTG 338228 Query 94888 CTGATCTGGAGGAATACCT 94906 |||||||||||| || ||| Sbjct 338229 CTGATCTGGAGGGATTCCT 338247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284072169920