Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq964 141 1e-28 seq1212 127 3e-24 >seq964 Length=50745 Score = 141 bits (156), Expect = 1e-28 Identities = 332/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 157093 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 157152 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 157153 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 157212 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 157213 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTAC 157271 |||||||||| | || |||||| ||||| || ||| | || || || ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 157272 GACGATGAATCCGGTAA--ATGGAAGACGGTTAC-CAAGT--GTTCAGGACACGATGATA 157326 || || || || || ||| |||||||| |||| | ||||| |||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 157327 ATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCaa 157384 | || || | | | ||| || | | || | | | ||||| | ||| ||| || Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAA 24013 Query 157385 aaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 157444 | | | ||| |||||||| | ||||||| || | || ||||| || |||| || Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953 Query 157445 TCCGAAACAAT-CTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCCC 157503 || ||| ||| | | | |||||||| | || | ||||| ||| || |||| | Sbjct 23952 -CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTC 23894 Query 157504 ATACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 157563 |||| ||| | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23893 ATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGA 23834 Query 157564 CGTGGAAA 157571 |||||| Sbjct 23833 ACTGGAAA 23826 >seq1212 Length=378467 Score = 127 bits (140), Expect = 3e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| || || || || || ||||| ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 33446 CAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 33502 |||||| || ||| |||| | | || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 |||||||| ||||| |||| || || || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 33546 ATAGtttt--tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 ||||||| |||||| | ||||| ||| ||| || | ||| | || |||||| || Sbjct 239561 ATAGTTTACCTTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCA 239620 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 ||||| || || ||||| || ||||||||||| |||||| |||| ||||| || || || Sbjct 239621 GAATGTATATTCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGA 239680 Query 33664 ACTTC 33668 ||||| Sbjct 239681 ACTTC 239685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||| | Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 33862 TATTGGATTGGGAAAATAACAAA 33884 || || || || ||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937295139520