Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17]
1,272 sequences; 115,227,500 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq964 141 1e-28
seq1212 127 3e-24
>seq964
Length=50745
Score = 141 bits (156), Expect = 1e-28
Identities = 332/488 (68%), Gaps = 15/488 (3%)
Strand=Plus/Minus
Query 157093 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 157152
|||| || || |||||||| || || || ||||| |||||| || ||| | ||| | |
Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248
Query 157153 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 157212
|| |||||| | | |||| ||||| ||| | || |||||||||||||| ||||
Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188
Query 157213 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTAC 157271
|||||||||| | || |||||| ||||| || ||| | || || || ||||| |||
Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129
Query 157272 GACGATGAATCCGGTAA--ATGGAAGACGGTTAC-CAAGT--GTTCAGGACACGATGATA 157326
|| || || || || ||| |||||||| |||| | ||||| ||||||
Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071
Query 157327 ATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCaa 157384
| || || | | | ||| || | | || | | | ||||| | ||| ||| ||
Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAA 24013
Query 157385 aaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 157444
| | | ||| |||||||| | ||||||| || | || ||||| || |||| ||
Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953
Query 157445 TCCGAAACAAT-CTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCCC 157503
|| ||| ||| | | | |||||||| | || | ||||| ||| || |||| |
Sbjct 23952 -CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTC 23894
Query 157504 ATACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 157563
|||| ||| | ||||| || || |||||||| ||| |||| | ||||||| ||||| |
Sbjct 23893 ATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGA 23834
Query 157564 CGTGGAAA 157571
||||||
Sbjct 23833 ACTGGAAA 23826
>seq1212
Length=378467
Score = 127 bits (140), Expect = 3e-24
Identities = 163/224 (73%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| || ||||| |||||||||||||| || || |||||||
Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | ||| || |||| || || || || || ||||| ||||| || | ||||| |
Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209
Query 33446 CAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 33502
|||||| || ||| |||| | | || ||||||||| ||||||| || |
Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546
|||||||| ||||| |||| || || || ||||| ||||||
Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 33546 ATAGtttt--tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603
||||||| |||||| | ||||| ||| ||| || | ||| | || |||||| ||
Sbjct 239561 ATAGTTTACCTTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCA 239620
Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663
||||| || || ||||| || ||||||||||| |||||| |||| ||||| || || ||
Sbjct 239621 GAATGTATATTCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGA 239680
Query 33664 ACTTC 33668
|||||
Sbjct 239681 ACTTC 239685
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861
|| ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||| |
Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438
Query 33862 TATTGGATTGGGAAAATAACAAA 33884
|| || || || ||||| || ||
Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622937295139520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |