Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 >seq10 Length=4880875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 ||| || ||||| |||||||| ||| |||| | || ||||||||||| ||||||| | Sbjct 829457 AGGAATTCCTCCTGATCAACAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACG 829516 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | || ||||| ||||| || |||||||| || |||| | ||| | |||||||| Sbjct 829517 AACTTTGAGTGATTACAACATCCAGAAAGAATCCACTCTTCACCTTGTGCTTAGATTGAG 829576 Query 24212 AGGAGG 24217 |||||| Sbjct 829577 AGGAGG 829582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429929334917160