Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1158 95.1 1e-14 >seq1158 Length=770266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| ||||| |||||||||||||||| ||||| Sbjct 337700 ACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCC 337759 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || ||| |||| | ||| ||||| || |||||||||||| Sbjct 337760 GTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 337814 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| ||||| |||||||||||||||| ||||| Sbjct 338133 ACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCC 338192 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || ||| |||| | ||| ||||| || |||||||||||| Sbjct 338193 GTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 338247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || ||||| || | || ||||| || || |||||||||||||||| ||||| Sbjct 340703 ACGAAGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCC 340762 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || ||| |||| | ||| ||||| || || ||||||||| Sbjct 340763 GTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 340817 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || |||||||| || |||||||||||||||| ||||| Sbjct 337342 ACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGTCC 337401 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || || |||| | ||| ||||| || || ||||||||| Sbjct 337402 GTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 337456 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| ||||| |||||||||||||||| || || Sbjct 338576 ACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCC 338635 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || ||| |||| | ||| ||||| || || ||||||||| Sbjct 338636 GTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 338690 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||||||||||| ||||| Sbjct 339101 ACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCC 339160 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| || |||||||| || ||| |||| | ||| ||||| || || ||||||||| Sbjct 339161 GTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 339215 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| ||||| |||||||||||||||| || || Sbjct 341061 ACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCC 341120 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || |||||||| || ||| |||| | ||| ||||| || || ||||||||| Sbjct 341121 ATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 341175 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||||||||||| ||||| Sbjct 341864 ACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCC 341923 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || |||||||| || ||| |||| | ||| ||||| || || ||||||||| Sbjct 341924 ATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCT 341978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005294996480