Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq485 123 2e-23 seq925 111 1e-19 >seq485 Length=5875 Score = 123 bits (136), Expect = 2e-23 Identities = 83/90 (92%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 ||||||||||||||||||||||||||||||||||| || || ||| ||||||||||| | Sbjct 2392 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGG-GACAGCGGG-AATCTCGTTAAAC 2449 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||||||||| Sbjct 2450 CATTCATGCGCGTCACTAATTAGATGACGA 2479 >seq925 Length=76709 Score = 111 bits (122), Expect = 1e-19 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATCCTTTC 25966 |||||||||||||||||||||||||||||| || || ||| ||||||| |||||| ||| Sbjct 69056 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGG-GACAGCGGG-AATCTCGGTAATCCATTC 68999 Query 25967 ATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||| |||||| Sbjct 68998 ATGCGCGTCACTAATTAGTTGACGA 68974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942007481032