Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq964 150 2e-31 seq1212 127 3e-24 seq2 84.2 3e-11 >seq964 Length=50745 Score = 150 bits (166), Expect = 2e-31 Identities = 333/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 155721 TGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAA 155780 |||| || || |||||||| || || || ||||| |||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 155781 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 155840 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 155841 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGGTTGTTAC 155899 |||||||||| | || |||||| ||||| || ||| | || || || ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 155900 GATGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCAGGACACGATGATA 155954 ||||| || || || ||| ||||| |||||| | ||||| |||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 155955 ATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCaa 156012 | || || | | | ||| || | | || | | | ||||| | ||| ||| || Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAA 24013 Query 156013 aaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 156072 | | | ||| |||||||| | ||||||| || | || ||||| || |||| || Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953 Query 156073 TCCGAAACAAT-CTCAAATATGGGAAATTTCAGGAGCAGAGTTTACACCTTCCAAGTCAC 156131 || ||| ||| | | | | |||||||| | || | ||||| |||| || |||| | Sbjct 23952 -CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTC 23894 Query 156132 ATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 156191 |||| || | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23893 ATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGA 23834 Query 156192 CGTGGAAA 156199 |||||| Sbjct 23833 ACTGGAAA 23826 >seq1212 Length=378467 Score = 127 bits (140), Expect = 3e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || |||| ||||| || || || || || ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 32803 CAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 |||||| || ||| |||| | | || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 |||||||| ||||| |||| ||||| || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 100 bits (110), Expect = 4e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 33219 TATTGAATTGGAAAAATAACAAA 33241 || ||||| |||||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 >seq2 Length=7758925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || | |||||||| ||||| ||||||| |||| | || || |||||||| || | Sbjct 5568497 TCCAGCCAAAGAAATGCATGCTCGTAAGTTTGGCATAATTAGGTTCAGCTATATGTATGT 5568556 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | | ||| ||||| || || || || | | || ||||||||||| | ||| ||| Sbjct 5568557 TGAGACTTTGGCTTTGGTCAATAAAAGCAGCACGATCAGCAGCCATTTTGACAATATTCT 5568616 Query 62037 TTTGTGGAATTTCCCA 62052 | || | |||||||| Sbjct 5568617 TCTGGGAGATTTCCCA 5568632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633621925251200