Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 2e-11 >seq10 Length=4880875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| ||||| ||||| | | || || || ||||| ||| | ||||||| || Sbjct 829457 AGGAATTCCTCCTGATCAACAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACG 829516 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| || | |||||||| || || ||||||||||| || || | ||||| || | || Sbjct 829517 AACTTTGAGTGATTACAACATCCAGAAAGAATCCACTCTTCACCTTGTGCTTAGATTGAG 829576 Query 25220 AGGAGG 25225 |||||| Sbjct 829577 AGGAGG 829582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433321282332680