Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 2e-14 seq7 95.1 2e-14 seq3 95.1 2e-14 seq1 95.1 2e-14 seq6 93.3 9e-14 seq1169 91.5 3e-13 seq942 87.8 4e-12 seq460 86.0 1e-11 >seq11 Length=5152901 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 3293371 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 3293312 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3293311 CCCACGTTGGGC 3293300 >seq7 Length=6125209 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 5789686 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 5789745 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 5789746 CCCACGTTGGGC 5789757 >seq3 Length=6703989 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 1977622 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 1977563 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1977562 CCCACGTTGGGC 1977551 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 1977780 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 1977721 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1977720 CCCACGTTGGGC 1977709 >seq1 Length=10041005 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2445371 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2445430 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2445431 CCCACGTTGGGC 2445442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2445519 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2445578 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2445579 CCCACGTTGGGC 2445590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2446449 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2446508 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2446509 CCCACGTTGGGC 2446520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2446598 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2446657 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2446658 CCCACGTTGGGC 2446669 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2452449 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2452508 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2452509 CCCACGTTGGGC 2452520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 2452598 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2452657 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2452658 CCCACGTTGGGC 2452669 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||||||||||||||| | ||||||||||| | | ||||||||||| Sbjct 2444772 ATCGCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGCTCGTGGGTTCG 2444831 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 2444832 AGCCCCACGTTGGGC 2444846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | ||| |||||||||||| Sbjct 2444924 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTAGTGGGTTCGAGC 2444983 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2444984 CCCACGTTGGGC 2444995 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | | |||||||||||||| Sbjct 2445073 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGCTCGTGGGTTCGAGC 2445132 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2445133 CCCACGTTGGGC 2445144 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | ||| |||||||||||| Sbjct 2445222 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTAGTGGGTTCGAGC 2445281 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2445282 CCCACGTTGGGC 2445293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| | ||||||||||| | ||| |||||||||||| Sbjct 2446300 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTAGTGGGTTCGAGC 2446359 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2446360 CCCACGTTGGGC 2446371 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 3296565 GTCTCTGTGGCGCAATGGATTAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 3296506 Query 142112 CCCCGCCAGAGACGC 142126 |||| ||| || || Sbjct 3296505 TCCCGGCAGGGATGC 3296491 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||||||||||||||| | ||||||||||| | | ||||||||||| Sbjct 2446148 ATCGCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGCTCGTGGGTTCG 2446207 Query 142561 AGCCCCACATCGGGC 142575 ||| |||| | |||| Sbjct 2446208 AGCTCCACGTTGGGC 2446222 >seq6 Length=2365711 Score = 93.3 bits (102), Expect = 9e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 142040 GCATTAAACGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGG 142098 |||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||| Sbjct 2339913 GCATTAAACGTC-GTCTCTGTGGCGCAATGGATTAGCGCGCTGGACTTCTAATCCAGAGG 2339971 Query 142099 TTGCGGGTTCGACCCCCGCCAGAGACGC 142126 || ||||||||| |||| ||| || || Sbjct 2339972 TTCCGGGTTCGAGTCCCGGCAGGGATGC 2339999 >seq1169 Length=276900 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | ||||||||||||||||||| | ||||||||||| | ||||||||||||||| Sbjct 206688 AGCCCTGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAG 206629 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 206628 CCCCACGTGGGGC 206616 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | ||||||||||||||||||| | ||||||||||| | |||||||||||||||| Sbjct 214547 GCCCTGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 214488 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 214487 CCCACGTGGGGC 214476 >seq942 Length=66406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 47142 GTCTCTGTGGCGCAATGGATTAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 47083 Query 142112 CCCCGCCAGAGACGC 142126 |||| ||| || || Sbjct 47082 TCCCGGCAGGGATGC 47068 >seq460 Length=5852 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 3705 GTCTCTGTGGCGCAATGGATTAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 3646 Query 142112 CCCCGCCAGAGA 142123 |||| ||| || Sbjct 3645 TCCCGGCAGGGA 3634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820048829752