Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-17 seq1158 96.9 6e-15 >seq13 Length=1792679 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 ||||| || ||||| || || || || || | ||| ||||||||| |||||||||||| Sbjct 68102 GGGCTTTCATGGTTAAACAGAATACCATTACTTGCGTGCATGCCATACGCCTCACGGTAG 68043 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 ||||| || |||||||||| ||| |||||| | || ||||| || || || | || Sbjct 68042 TTCACAACTATCCAGTATGCGTACACCTTTGCGGCAGCATACGGGGATCGAGGGTAAAAC 67983 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGAC 268554 || ||||| ||||| |||||||| |||| Sbjct 67982 GGGGTCGTCTCTTTTTGCGGGATTTCCTGGAC 67951 >seq1158 Length=770266 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | |||||||| || ||||||||||| |||||||| |||||| Sbjct 340244 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGC 340303 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | || ||||| | |||||| || ||||| || || | |||||| || || | Sbjct 340304 TCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGG 340363 Query 68353 GAATGCCT 68360 |||| ||| Sbjct 340364 GAATTCCT 340371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||| || | |||||||| || || ||||||||||||||||| |||||| Sbjct 338120 TTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGC 338179 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | || ||||| | |||||| || ||||| || || | ||| || || || | Sbjct 338180 TCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAG 338239 Query 68353 GAATGCCT 68360 | || ||| Sbjct 338240 GGATTCCT 338247 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||| || | |||||||| || || ||||||||||||||||| |||||| Sbjct 338563 TTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGC 338622 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | || ||||| | |||||| || ||||| || || | ||| || || || | Sbjct 338623 TCAGTGTACGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGG 338682 Query 68353 GAATGCCT 68360 | || ||| Sbjct 338683 GGATTCCT 338690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | |||||||| || || ||||||||||||||||| |||||| Sbjct 341048 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGC 341107 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | |||||||| | |||||| || ||||| || || | ||| || || || | Sbjct 341108 TCAGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGG 341167 Query 68353 GAATGCCT 68360 | || ||| Sbjct 341168 GGATTCCT 341175 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | |||||||| || || ||||||||||||||||| |||||| Sbjct 337687 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGC 337746 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | || ||||| | |||||| || ||||| || || | ||| || || || | Sbjct 337747 TCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAG 337806 Query 68353 GAATGCCT 68360 | || ||| Sbjct 337807 GGATTCCT 337814 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | |||||||| || ||||||||||| |||||||| |||||| Sbjct 339088 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGC 339147 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| | || ||||| | |||||| || ||||| || || | ||| || || || | Sbjct 339148 TCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGG 339207 Query 68353 GAATGCCT 68360 | || ||| Sbjct 339208 GGATTCCT 339215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607746203840