Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1158 93.3 4e-14 seq10 84.2 2e-11 >seq1158 Length=770266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| |||||||| |||||||||||||||| ||||| |||||| Sbjct 341067 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTC 341126 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || || || || ||| Sbjct 341127 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 341175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| ||||| || |||||||||||||||| ||||| |||||| Sbjct 341426 AACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTC 341485 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || || ||||| ||| Sbjct 341486 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGAATTCCT 341534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| |||||||| |||||||||||||||| || || ||||| Sbjct 337706 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 337765 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || ||||| || ||| Sbjct 337766 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 337814 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| |||||||| |||||||||||||||| || || ||||| Sbjct 338139 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 338198 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || ||||| || ||| Sbjct 338199 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 338247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| |||||||| |||||||||||||||| ||||| ||||| Sbjct 338582 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCGTCTTC 338641 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || || || || ||| Sbjct 338642 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 338690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || ||||| || |||||||||||||||| || || ||||| Sbjct 340263 AACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 340322 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| ||||| || || ||||| ||| Sbjct 340323 AAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCT 340371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | ||||| ||||| || |||||||||||||||| || || ||||| Sbjct 340709 AACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 340768 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || || || || ||| Sbjct 340769 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 340817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||||| ||||| || |||||||||||||||| || || |||||| Sbjct 341870 AACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCATCTTC 341929 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| || ||||||||| |||| ||||| || || || || || || ||| Sbjct 341930 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCT 341978 >seq10 Length=4880875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || ||||||||||| |||| ||| || |||||||||||| || ||| Sbjct 829552 GTGGATTCTTTCTGGATGTTGTAATCACTCAAAGTTCGTCCATCTTCAAGTTGCTTGCCA 829493 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||| | | ||||| || |||||||| ||| Sbjct 829492 GCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCT 829457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127886866464