Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1212 100 5e-16 >seq1212 Length=378467 Score = 100 bits (110), Expect = 5e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||||| || |||||||| || ||||| || || Sbjct 239312 CTCTTCAATGCGATTGAGACTTTGCCCTGTGTCCGAAAGAAGGCAGAATGGGCTCTAAAG 239253 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | | || | || | | ||| | | | || ||| || | || || Sbjct 239252 TGGATCTCGGATTCTGAATCTACCTATGCTGAGCGAATTATTGCTTTTGCCTCTGTTGAA 239193 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 |||||||| ||| || |||| ||| ||||||||||| | || || |||| | ||| Sbjct 239192 GGCATCTTTTTCAGCGGTTCCTTTGCCGCCATCTTCTGGTTGAAAAAGCGAGGTCT-GAT 239134 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||||||||| || || || ||||| || ||||| || |||| Sbjct 239133 GCCCGGACTCACTTTTTCAAATGAACTGATTAGCAGAGATGAGG 239090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324185006720