Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1158 93.3 1e-13 seq10 87.8 4e-12 >seq1158 Length=770266 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||||||| | || || |||||||||| ||||| Sbjct 341509 CTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTGAGCGATTACAACATCCAG 341450 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 341449 AAAGAGTCTACTCTTCACTTGGTT 341426 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||||||| | || || |||||||||| ||||| Sbjct 341953 CTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGCACACTGAGCGATTACAACATCCAG 341894 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 341893 AAAGAGTCTACTCTTCACTTGGTT 341870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| ||||| Sbjct 340792 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAACATCCAG 340733 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 340732 AAAGAGTCTACTCTTCACTTAGTT 340709 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||||||| | || || |||||||||| |||| Sbjct 341150 CTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTGAGCGATTACAACATCCAA 341091 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 341090 AAAGAGTCTACTCTTCACTTGGTT 341067 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| |||| Sbjct 337789 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAACATCCAA 337730 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 337729 AAAGAGTCTACTCTTCACTTGGTT 337706 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| |||| Sbjct 338222 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAACATCCAA 338163 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 338162 AAAGAGTCTACTCTTCACTTGGTT 338139 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| |||| Sbjct 338665 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGTACACTGAGCGATTACAACATCCAA 338606 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||||||||||||| | ||| Sbjct 338605 AAAGAGTCTACTCTTCACTTGGTT 338582 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| ||||| Sbjct 339190 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAACATCCAG 339131 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||| ||||||||| | ||| Sbjct 339130 AAAGAGTCCACTCTTCACTTGGTT 339107 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| | ||||| ||| | || || |||||||||| ||||| Sbjct 340346 CTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAACATCCAG 340287 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||| ||||||||| | ||| Sbjct 340286 AAAGAGTCCACTCTTCACTTGGTT 340263 >seq10 Length=4880875 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | |||||||| || ||||| | ||||||||| | |||||| ||||||||| Sbjct 829477 AAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACGAACTTTGAGTGATTACAACA 829536 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGT 201017 |||||||||| || |||||||||||||| Sbjct 829537 TCCAGAAAGAATCCACTCTTCACCTTGT 829564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902386525224