Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1158 82.4 8e-11 >seq1158 Length=770266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||||||| | || ||||| || || || | ||| || || ||||| || |||| ||| Sbjct 340370 GGAATTCCCCCAGATCAACAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGC 340311 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || | ||| ||||||||||| || || | || || || ||||| || ||| | ||| Sbjct 340310 ACACTGAGCGATTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTTCGTCTCAGA 340251 Query 38466 GGCGG 38470 || || Sbjct 340250 GGAGG 340246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164847252480