Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1182 179 1e-39 seq3 176 2e-38 seq1231 120 1e-21 seq10 98.7 4e-15 seq9 89.7 2e-12 >seq1182 Length=543332 Score = 179 bits (198), Expect = 1e-39 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 ||||||||||||||||| || ||||||||| || ||||||||| | ||||||| Sbjct 525495 GGTGAAACTAAAACTTTCTTCCCGGAAGAAATTAGTTCCATGGTTCTTCTTCGAATGAAA 525554 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 ||||| || ||| |||| | ||| || | || |||||||| |||| || || ||| Sbjct 525555 GAAACCGCTGAAGCATATCTCGGTAAAACAATCACCGATGCAGTGGTTACAGTACCTGCT 525614 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 |||||||| ||| ||||| | ||||| || |||||||||||| ||| ||||| | ||| Sbjct 525615 TATTTCAACGATTCACAAAGACAAGCCACCAAAGATGCAGGAACCATTTCTGGTCTCAAT 525674 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||| ||||||| ||||| || || |||||||| | |||||||| Sbjct 525675 GTTCTTAGAATTATCAATGAGCCAACTGCAGCTGCCATTGCATATGG 525721 Score = 107 bits (118), Expect = 8e-18 Identities = 290/437 (66%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || ||||||||||| || |||||||| || ||||| ||||||||||| | || | Sbjct 527009 AACCCAGATGAAGCTGTCGCTTATGGTGCAGCCGTTCAGGCAGCTATTCTTA---GTGGA 527065 Query 452051 GATGA---TGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 ||| | ||| | | ||| |||| || | ||||| ||||| |||||||||| Sbjct 527066 GATAAATCGGAAGAGGTTCAGGATCTTCTCTTGTTGGATGTTGCACCTTTATCTCTTGGT 527125 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 |||| || ||||| ||| ||||||| ||| || || || ||| || | || Sbjct 527126 ATTGAGACCGCTGGAGGAGTGATGACAGCTTTGATCAAGAGAAACACTACTGTCCCAACC 527185 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 ||| | |||| ||| | || || |||||||||||||| || |||||| Sbjct 527186 AAACAATCCCAAATATTCACCACTTACTCGGACAACCAACCAGGTGTGTTGATCCAAGTG 527245 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 | || || |||||| | ||||| || || || | ||| || | || || || Sbjct 527246 TACGAGGGTGAACGTACGATGACCAAGGACAACAACATACTTGGTAAGTTCGAGCTCTCC 527305 Query 452288 AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCA 452347 ||| || ||| || | ||| ||| || ||||| | || | ||| | ||||| Sbjct 527306 GGCATCCCCCCTGCACCTCGTGGAGTTCCACAGATTGAGGTGACATTCGATATCGATGCT 527365 Query 452348 AATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTA 452405 || ||||| | ||||| ||| ||||| || | || |||| ||| |||| || || | Sbjct 527366 AACGGTATCTTGAATGTATCTGCTGTTGACAAGAGCA-CTGG-AAAGGAGAATAAGATCA 527423 Query 452406 CAATTACTAATGATAAA 452422 |||| || || || ||| Sbjct 527424 CAATCACCAACGACAAA 527440 >seq3 Length=6703989 Score = 176 bits (194), Expect = 2e-38 Identities = 245/343 (71%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || |||||||| || || ||||| || || | ||||| | | ||| Sbjct 5820256 GTTTTAACAAAAATGAAGGAGACTGCAGAGAGTTACCTTAATCAACCAGTCAAAAACGCA 5820197 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 ||| | || ||||| ||||| || |||||| | ||||| ||||| || || ||||| || Sbjct 5820196 GTAGTAACAGTTCCGGCTTACTTTAATGATTCTCAACGTCAAGCTACAAAGGATGCCGGC 5820137 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||| |||| || |||||||| || |||| |||||||||||||| ||||| || || Sbjct 5820136 CAGATTTCTGGGTTGAATGTTCTACGTGTTATCAATGAACCTACAGCGGCTGCCCTTGCT 5820077 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| | ||| | | ||||||| |||| ||| || | || ||||| Sbjct 5820076 TATGG-CATGGATA--------AGTCAGAAGATAAAATTATAGCCGTGTACGACCTTGGT 5820026 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || || |||| ||| | ||| |||| | | || || |||||||||||| || Sbjct 5820025 GGTGGTACCTTCGATATTTCATTGCTTGAAATTCAGAAGGGTGTGTTTGAAGTAAAGTCA 5819966 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATG 451607 || ||||| ||||||| ||| |||||||||||| |||| |||| Sbjct 5819965 ACAAATGGAGATACTCTTCTTGGAGGTGAAGATTTTGACAATG 5819923 >seq1231 Length=98070 Score = 120 bits (132), Expect = 1e-21 Identities = 355/543 (65%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| | ||||| ||||| ||||| || | |||||| || || || | || |||| || Sbjct 75254 AGCAGTAGGAATCGATCTGGGAACAACGTATTCATGCGTTGGCGTCTTCCGCCATGGCAA 75313 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 || || ||||| || || |||||||| ||||||| || | || || | Sbjct 75314 AGTCGAGATTATTGCCAACGACCAAGGTAATAGAACTACACCAAGCTATGTCGCATTCAA 75373 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAAT--CAATGGTAAATTCAAATGCCAAA 451090 || ||||||| | | || | | || ||| ||| || |||| || || Sbjct 75374 CGAAACAGAAAGGTTGATCGGTGATGGGGCCAAAGACCAA--GTTGCCAGAAATCCCGAA 75431 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || || | | ||| || || | || ||||| | | || | ||| ||||||| Sbjct 75432 AATTCAATTTTTGACGCAAAGAGATTGATTGGAAGAAATTACAACGATCCAGCTGTACAG 75491 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 || || ||| || || ||| | ||||||||| | || ||||| || | | ||||| Sbjct 75492 AAGGATAAAGAACACTGGCCTTTCAAGGTAGTAAATAAGAATGGAAAACCATTTCTTCAA 75551 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 | | ||| |||| || || || ||| | || || ||||| | ||||||||| Sbjct 75552 GCGGAATATCAAGGCGACGTGAAGACGTTTTCACCCGAGGAAATCAGTGCAATGGTTCTT 75611 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 ||||| ||||| || || || ||| ||| | ||| || | || || || || Sbjct 75612 ACTAAGATGAAGGACACTGCGGAAGCATACCTCGGTGAAAATGTAAAGGACGCGGTTATA 75671 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT-AT 451389 || || || ||||| ||||| || ||||||| |||||||| ||||| || || ||| || Sbjct 75672 ACAGTACCTGCTTACTTCAACGACTCACAACGACAAGCAACAAAAGACGCTGG-CATCAT 75730 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || || | || || || || | || || ||||| |||||||| || | || || || Sbjct 75731 CGCAGGACTGAACGTACTCAGAGTGATAAACGAACCCACAGCAGCGGCATTGGCGTACGG 75790 Query 451450 ACT 451452 ||| Sbjct 75791 ACT 75793 >seq10 Length=4880875 Score = 98.7 bits (108), Expect = 4e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 391151 AGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG 391210 |||||||||||||||||||||| | || || ||| | || || ||||||||||||||| | Sbjct 829457 AGGAATTCCTCCTGATCAACAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACG 829516 Query 391211 AACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAG 391270 ||||||| ||||| || || | || || | || |||||| | || | ||| |||| Sbjct 829517 AACTTTGAGTGATTACAACATCCAGAAAGAATCCACTCTTCACCTTGTGCTTAGATTGAG 829576 Query 391271 AGGA 391274 |||| Sbjct 829577 AGGA 829580 >seq9 Length=6586237 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATT 451486 || || || ||| | |||||||| || | ||| ||||| | |||||| |||||| Sbjct 5101495 ACTGCTGCAGCTATTGCATATGGTCTTGACAAA---AAAGAG---GGAGAAAAGAATATT 5101442 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | || |||||||| || || || ||| |||| |||| | ||| | ||||| ||||| Sbjct 5101441 CTTGTTTTTGATTTGGGCGGCGGTACTTTTGATGTTTCTATGCTTACTATTGACAATGGG 5101382 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGG 451587 || ||||| || | |||| ||||| ||||||||||| || Sbjct 5101381 GTGTTTGAGGTCATTTCAACAAATGGAGATACTCATCTTGG 5101341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975686200729376