Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1231 248 7e-60 seq1182 170 1e-36 seq9 102 6e-16 >seq1231 Length=98070 Score = 248 bits (274), Expect = 7e-60 Identities = 933/1448 (64%), Gaps = 33/1448 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || ||||| || || | ||||| | |||| || | || || ||||| | || ||| Sbjct 76690 ATTCCATTTGCGTCGATGTCAAACGAAACTTTGATCTTTGGCACACCTCTTGGTGCTGGT 76631 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 | || || | ||||||||||| || ||| |||| ||| || | |||||| Sbjct 76630 GCTATTCCAGTGAGGTTAAATGTTCCGAGCAGATTGTTATGTTTCGTCTGTGCTCGTTCG 76571 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||| ||| ||| || || || ||| ||||||||| | || || || || || ||| Sbjct 76570 CCTTCGTAAACTTGAATTGTGACGGCAGGTTGATTATCAGCGTACGTGGTGAACAC-CTG 76512 Query 517454 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 || | || || ||| ||||||||| || | | || ||||| || | || || Sbjct 76511 TGAAGTATTGTGTGGGATTCTTGTGTTTCGTTCCACCAGCTTTGTCATCATCTCGCCGGC 76452 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 ||| || | || | || ||||| | || || || | |||| | | ||| | Sbjct 76451 TGTCTCAATTCCCAACGATAGAGGTGCAACGTCGACCA--ACAACACATC----TTTCAC 76398 Query 517573 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 | | | || ||| | || || || | |||||||| || ||||| ||||| || Sbjct 76397 GCCGGAGTTGCCTGTAAGCACTGCCGCCTGCACCGCAGCACCGTAGGCAACTGCTTCGTC 76338 Query 517633 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC 517692 || || | | || || || ||||| || || || |||| || | | | || Sbjct 76337 GGGGTTGATTGATTTGTTAAGATTTTTTCCGTTAAAGAAATCACTGAGTAACTTTTGCAC 76278 Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 | | || || | | ||||||||| || | |||| ||| | | || | |||||| || Sbjct 76277 CCTCGGGATCCTGGTTGATCCTCCGACAAGAACAACTTCGTCGATCTTCGTTTTATCTAG 76218 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 || | ||| || | ||||||| || || ||||||| | | || | || || || Sbjct 76217 CTTAGCATCTCTTAGAGCTTTTTCGACAGGGTCAAGACAGGAACGGAAGAGATCGGAGCA 76158 Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGA-GTGACATTA-TAATCAATTCCTTCGAACAAA 517870 |||||||||||| | ||||| | ||| | || || |||||||||||||| | | | Sbjct 76157 CAGTTCTTCGAATCTTGCTCT--TGAGATTTTACTGTAGAAATCAATTCCTTCGTATAGA 76100 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 ||||| | || | | || || ||||| | || || | || ||||| || ||||| Sbjct 76099 GAATCCAACTCGACAGCAGCTTCTGTCGAGGTTGAGAGGACGCGCTTAGCTCGCTCACAG 76040 Query 517931 GCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTC 517988 || |||| || ||||| | | || || || |||| | || |||| | ||||| Sbjct 76039 GCCGTCCGTAATCTTCTAATTGCCCTGTTACTCTTTGA--GATGTCCTTTTTGTGTTTTC 75982 Query 517989 TCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 |||||| |||||| | ||| | || | || ||||| || || || || || | Sbjct 75981 GCTTGAACTCTTCAGTGAA--ATGCTTCACCATTCGGTTATCGAAGTCCTCTCCGCCAAG 75924 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCAA--GAGACAAA 518101 | || | || | || | |||| |||| ||| || || | | || | Sbjct 75923 ATGGGTGTCCCCAGCAGTTGAAAGAACTTCAAAAATTGATCCTTCGTCGATGGTGAGCAC 75864 Query 518102 AGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 518161 |||| ||||| |||||| || || | ||| ||||| | || || | || | Sbjct 75863 AGAG--ACATCGAAGGTTCCGCCGCCAAGATCGAAAATTAAAACCTTTTTCTCGCCAGCC 75806 Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 ||| ||||| || || ||||| || || || || || ||||| || || | ||| | Sbjct 75805 AAGTTCTTATCGAGTCCGTACGCCAATGCCGCTGCTGTGGGTTCGTTTATCACTCTGAGT 75746 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || || || || || || | || || ||||| || ||||||| |||||| ||||| || Sbjct 75745 ACGTTCAGTCCTGCGATGATGCCAGCGTCTTTTGTTGCTTGTCGTTGTGAGTCGTTGAAG 75686 Query 518282 TATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT 518341 || ||||| || || ||||| || || |||| | || ||| | || || || || Sbjct 75685 TAAGCAGGTACTGTTATAACCGCGTCCTTTACATTTTCACCGAGGTATGCTTCCGCAGTG 75626 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA 518401 | ||||| ||| | | || ||||| |||| || || ||| | ||| || Sbjct 75625 TCCTTCATCTTAGTAAGAACCATTGCACTGATTTCCTCGGGTGAAAACGTCTTCACGTCG 75566 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT---TTAAATGGC 518458 ||||||| ||| || | ||||| || ||| ||| | ||| || || ||| Sbjct 75565 CCTTGATATTCCGCTTGAAGAAATGGT---TTTCCATTCTTATTTACTACCTTGAAAGGC 75509 Query 518459 CAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTT 518518 |||| || |||| || ||| | | || || ||| ||| ||||| |||| ||| Sbjct 75508 CAGTGTTCTTTATCCTTCTGTACAGCTGGATCGTTGTAATTTCTTCCAATCAATCTCTTT 75449 Query 518519 GCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATC 518578 || |||||||| | ||| ||||| | ||| |||| | |||||| |||| || ||| Sbjct 75448 GCGTCAAAAATTGAATTTTCGGGATTTCTGGCAACTTGGTCTTTGGCCCCATCACCGATC 75389 Query 518579 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 518638 | |||||| || | |||| ||||| ||| || || | ||||||||| || || Sbjct 75388 AACCTTTCTGTTTCGTTGAATGCGACATAGCTTGGTGTAGTTCTATTACCTTGGTCGTTG 75329 Query 518639 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 518698 |||||||| || ||||| |||| | | || || || || | | |||||||| | | Sbjct 75328 GCAATAATCTCGACTTTGCCATGGCGGAAGACGCCAACGCATGAATACGTTGTTCCCAGA 75269 Query 518699 TCAATACC 518706 || || || Sbjct 75268 TCGATTCC 75261 >seq1182 Length=543332 Score = 170 bits (188), Expect = 1e-36 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| ||||| |||||||| ||||| |||||||| | |||| Sbjct 525733 TTTTTGTCTAAACCATATGCAATGGCAGCTGCAGTTGGCTCATTGATAATTCTAAGAACA 525674 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 525673 TTGAGACCAGAAATGGTTCCTGCATCTTTGGTGGCTTGTCTTTGTGAATCGTTGAAATAA 525614 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||| || |||| || ||||| || | | |||||| | ||| || || |||| | Sbjct 525613 GCAGGTACTGTAACCACTGCATCGGTGATTGTTTTACCGAGATATGCTTCAGCGGTTTCT 525554 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG 518383 |||||| | | || ||| || ||||| ||| ||| Sbjct 525553 TTCATTCGAAGAAGAACCATGGAACTAATTTCTTCCGGG 525515 Score = 140 bits (154), Expect = 2e-27 Identities = 322/485 (66%), Gaps = 0/485 (0%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| ||||| | ||||| || ||||| | ||| ||||| || ||||| Sbjct 527397 TTGTCAACAGCAGATACATTCAAGATACCGTTAGCATCGATATCGAATGTCACCTCAATC 527338 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || || | | ||||| ||||| || | | || | || || | || Sbjct 527337 TGTGGAACTCCACGAGGTGCAGGGGGGATGCCGGAGAGCTCGAACTTACCAAGTATGTTG 527278 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | | |||||||||||| | | |||||| || | | ||| || Sbjct 527277 TTGTCCTTGGTCATCGTACGTTCACCCTCGTACACTTGGATCAACACACCTGGTTGGTTG 527218 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || || ||||| || |||| | ||||| ||| || | || |||||||| | || Sbjct 527217 TCCGAGTAAGTGGTGAATATTTGGGATTGTTTGGTTGGGACAGTAGTGTTTCTCTTGATC 527158 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | | ||||| | || || || || || | ||||||||| | ||| | ||||| | Sbjct 527157 AAAGCTGTCATCACTCCTCCAGCGGTCTCAATACCAAGAGATAAAGGTGCAACATCCAAC 527098 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 | || || || |||| | ||| | | ||| |||||||||||| |||| || Sbjct 527097 AAGAGAAGATCCTGAACCTCTTCCGATTTATCTCCACTAAGAATAGCTGCCTGAACGGCT 527038 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||| || || | || || || | || || |||||||| Sbjct 527037 GCACCATAAGCGACAGCTTCATCTGGGTTGATAGATTTGTTCAATTCCTTTCCATTGAAG 526978 Query 517670 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 |||| | | | || | | ||| |||||||||| || || ||||| || || || Sbjct 526977 AAATCTTTCAACATTTTTTGGATCTTGGGAATACGAGTGGAGCCACCAACCAAAACGATG 526918 Query 517730 TCATG 517734 || || Sbjct 526917 TCGTG 526913 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||||||| ||||||| || ||||||||||| ||||| || ||| ||||||||| | || Sbjct 525726 CTAAACCATATGCAATGGCAGCTGCAGTTGGCTCATTGATAATTCTAAGAACATTGAGAC 525667 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | | ||| | | | ||| || |||||||| |||| || || ||||| || |||| Sbjct 525666 CAGAAATGGTTCCTGCATCTTTGGTGGCTTGTCTTTGTGAATCGTTGAAATAAGCAGGTA 525607 Query 322359 CAGTAATAACTGC 322371 | |||| ||||| Sbjct 525606 CTGTAACCACTGC 525594 >seq9 Length=6586237 Score = 102 bits (112), Expect = 6e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || || |||| |||| ||||||||||||| |||| ||||| || || ||| Sbjct 4799284 GGTTCGTTGATGATCCTCATAACAGTAAGACCAGCAATGGTTCCCGCATCCTTGGTCGCT 4799225 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 | ||| || | ||||| ||||| || || || || | || |||| || |||| || Sbjct 4799224 TTTCTCTGGGCGTCGTTGAAATAAGCTGGCACCGTCACCACTGCATGCGTGACTTTCTTG 4799165 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354 || | |||||| ||||||| ||||||||||| Sbjct 4799164 CCCAAATAAGCTTCAGCCGTTTCTTTCATTTTAC 4799131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780759279170032