Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1231 300 2e-76 seq1182 131 2e-25 seq3 113 6e-20 seq9 107 2e-18 seq303 84.2 3e-11 >seq1231 Length=98070 Score = 300 bits (332), Expect = 2e-76 Identities = 1031/1591 (65%), Gaps = 41/1591 (3%) Strand=Plus/Minus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 ||||| ||||| || || || ||||| | ||| |||| || ||| | ||||| || Sbjct 76816 TCTTCTTCTTTGTATTTCTCAGCATCAGCCAGCATAGTTTCTATATCTGCCTTCGACAAG 76757 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGC 6690 | || || | | ||||| |||| |||| ||| |||| | | |||| || Sbjct 76756 CGGCCTTTGT------TGATCGTGATCTGGTTCGCCTTT-CCCGTGCTTTCGTCTTTGGC 76704 Query 6691 ACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACC 6750 || | ||| || |||||||| || | || ||| || || || | ||| ||| Sbjct 76703 GGAGACTTGCAAGATTCCATTTGCGTCGATGTCAAACGAAACTTTGATCTTTGGCACACC 76644 Query 6751 CCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGC 6810 || ||||| | || || || || | | |||||| || || | | |||||| ||| Sbjct 76643 TCTTGGTGCTGGTGCTATTCCAGTGAGGTTAAATGTTCCGAGCAGATTGTTATGTTTCGT 76584 Query 6811 CTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGT 6870 || ||||| ||||| || |||| |||||| || |||||||||||||| ||| Sbjct 76583 CTGTGCTCGTTCGCCTTCGTAAACTTGAATTGTGACGGCAGGTTGATTATCAGCGTACGT 76524 Query 6871 TGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCAT 6930 | ||| | ||| | || ||| || | || |||| | | | ||||| Sbjct 76523 GGTGAACACCTGTGAAGTATTGTGTGGGATTCTTGTGTTTCGTTCCACCAGCTTTGTCAT 76464 Query 6931 AATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC 6990 || | || || || | ||| | || ||||||| ||||| | | |||| || Sbjct 76463 CATCTCGCCGGCTGTCTCAATTCCCAACGATAGAGGTGCAACGTCGACCAACAACACATC 76404 Query 6991 TTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGC 7050 || || ||| ||| || | | || || || |||| || ||||| || Sbjct 76403 TTTCACGCCGGAGTTGCCT------GTAAGCACTGCCGCCTGCACCGCAGCACCGTAGGC 76350 Query 7051 GACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--GA- 7107 || || || |||||||| || | ||| || || | ||| |||||||| |||| || Sbjct 76349 AACTGCTTCGTCGGGGTTGATTGATTTGTTAAGATTTTTTCCGTTAAAGAAATCACTGAG 76290 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 |||| |||| | ||||||| | || ||||| ||||| | ||| | ||| | | Sbjct 76289 TAACTTTTGC---ACCCTCGGGATCCTGGTTGATCCTCCGACAAGAACAACTTCGTCGAT 76233 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 |||| |||||| | ||| | |||| || | |||||||||||| || | ||| ||| Sbjct 76232 CTTCGTTTTATCTAGCTTAGCATCTCTTAGAGCTTTTTCGACAGGGTCAAGACAGGAACG 76173 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||| | || |||||||| || || | ||| | | || | |||||||||| Sbjct 76172 GAAGAGATCGGAGCACAGTTCTTCGAATCTTGCTCTTGAGATTTTACTGTAGAAATCAAT 76113 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA--ACGTTCGC 7345 || ||||||| ||||| | || | | | || || || | || | ||| ||| Sbjct 76112 TCCTTCGTATAGAGAATCCAACTCGACAGCAGCTTCTGTCGAGGTTGAGAGGACG--CGC 76055 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG---GAAATA 7402 || || |||||||| ||||| ||||| | | || || | ||||| || || Sbjct 76054 TTAGCTCGCTCACAGGCCGTCCGTAATCTTCTAATTGCCCT---GTTACTCTTTGAGATG 75998 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || || || ||||| || || |||||||||| ||| || | | || |||||| Sbjct 75997 TCCTTTTTGTGTTTTCGCTTGAACTCTTCAGTGAAATGCTTCACCATTCGGTTATCGAAG 75938 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || || || | || || ||||| || || | |||||||| || |||||| Sbjct 75937 TCCTCTCCGCCAAGATGGGTGTCCCCAGCAGTTGAAAGAACTTCAAAAATTGATCCTTCG 75878 Query 7523 ---ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||| | | || || ||||| || || || || || || || ||||| | || || Sbjct 75877 TCGATGGTGAGCACAGAGACATCGAAGGTTCCGCCGCCAAGATCGAAAATTAAAACCTTT 75818 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | ||| | | |||||||||||| |||||||| | ||||| || || ||||| || Sbjct 75817 TTCTCGCCAGCCAAGTTCTTATCGAGTCCGTACGCCAATGCCGCTGCTGTGGGTTCGTTT 75758 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTG 7698 || | | || |||||| || || || | |||| || ||||| || ||||||||||| Sbjct 75757 ATCACTCTGAGTACGTTCAGTCCTGCGAT-GATGCCAGCGTCTTTTGTTGCTTGTCGTTG 75699 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| ||||| || || || |||| ||||||||| | || || | |||||| || Sbjct 75698 TGAGTCGTTGAAGTAAGCAGGTACTGTTATAACCGCGTCCTTTACATTTTCACCGAGGTA 75639 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | |||||| | || ||||| || ||||||||||| | || || || | | ||| Sbjct 75638 TGCTTCCGCAGTGTCCTTCATCTTAGTAAGAACCATTGCACTGATTTCCTCGGGTGAAAA 75579 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 | ||| || || | | | || ||| || | ||||| || || | Sbjct 75578 CGTCTTCACGTCGCCTTGATATTCCGCTTGAAGAAATGGTTT-TC--CATTCTTATTTAC 75522 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 ||||| | | ||| | || |||| | || || | | || | |||||||| Sbjct 75521 TACCTTGAAAGGCCAGTGTTCTTTATCCTTCTGTACAGCTGGATCGTTGTAATTTCTTCC 75462 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 || | | |||||| ||||||| || |||| ||| || |||| ||||| || || Sbjct 75461 AATCAATCTCTTTGCGTCAAAAATTGAATTTTCGGGATTTCTGGCAACTTGGTCTTTGGC 75402 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 | | || ||||| | || || | |||| | || ||||| || ||| || |||| Sbjct 75401 CCCATCACCGATCA-ACCTT--TCTGTTTCGTTGAATGCGACATAGCTTGGTGTAGTTCT 75345 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 ||| ||||||||||| |||||||| || || | | | | ||||||| ||||| || Sbjct 75344 ATTACCTTGGTCGTTGGCAATAATCTCGACTTTGCCATGGCGGAAGACGCCAACGCATGA 75285 Query 8119 ATACGTTGTTCCTAAATCAATACCGATTGCT 8149 |||||||||||| | ||| || || | |||| Sbjct 75284 ATACGTTGTTCCCAGATCGATTCCTACTGCT 75254 >seq1182 Length=543332 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || | ||| || || || || || || ||||| ||||| ||||| | |||| Sbjct 525733 TTTTTGTCTAAACCATATGCAATGGCAGCTGCAGTTGGCTCATTGATAATTCTAAGAACA 525674 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||| ||| ||| | |||||||| || ||||||| ||| |||||||| || || Sbjct 525673 TTGAGACCAGAAATGGTTCCTGCATCTTTGGTGGCTTGTCTTTGTGAATCGTTGAAATAA 525614 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || || |||| | | ||||||||||| | ||| ||| | ||| Sbjct 525613 GCAGGTACTGTAACCACTGCATCGGTGATTGTTTTACCGAGATATGCTTCAGCGGTTTCT 525554 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||||| ||||||||| || ||| ||||| Sbjct 525553 TTCATTCGAAGAAGAACCATGGAACTAATTTCTTC 525519 Score = 125 bits (138), Expect = 9e-24 Identities = 350/532 (66%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACT 6693 || || || || || || || ||||| ||| ||| || | | ||| || ||||| Sbjct 527442 CCTTTGTCGTTGGTGATTGTGATCTTATTCTCCTTT-CCAGTGCTCTTGTCAACAGCAGA 527384 Query 6694 TACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCT 6753 ||||||||| ||||| || ||||| | |||||| | || | ||| ||||| || | Sbjct 527383 TACATTCAAGATACCGTTAGCATCGATATCGAATGTCACCTCAATCTGTGGAACTCCACG 527324 Query 6754 CGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTT 6813 ||||| | || || || | | || || ||||||||| |||| ||| | | | | Sbjct 527323 AGGTGCAGGGGGGATGCCGGAGAGCTCGAACTTACCAAGTATGTTGTTGTCCTTGGTCAT 527264 Query 6814 CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGA 6873 | |||||||||| || || |||| || ||| | ||||| || || || | Sbjct 527263 CGTACGTTCACCCTCGTACACTTGGATCAACACACCTGGTTGGTTGTCCGAGTAAGTGGT 527204 Query 6874 GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 ||| ||||| || || | ||| | || || |||||| || | | ||||| | Sbjct 527203 GAATATTTGGGATTGTTTGGTTGGGACAGTAGTGTTTCTCTTGATCAAAGCTGTCATCAC 527144 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 || || || || | |||||||| | ||||| || ||||| | | || || || Sbjct 527143 TCCTCCAGCGGTCTCAATACCAAGAGATAAAGGTGCAACATCCAACAAGAGAAGATCCTG 527084 Query 6994 AACAGATTCG---TTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATG 7049 ||| ||| || || ||| ||||| | || || || || | || || || | Sbjct 527083 AACCTCTTCCGATTTATCTCCAC----TAAGAATAGCTGCCTGAACGGCTGCACCATAAG 527028 Query 7050 CGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATA 7109 |||| || ||||| ||||| || | ||| |||| ||| || || || || |||| | Sbjct 527027 CGACAGCTTCATCTGGGTTGATAGATTTGTTCAATTCCTTTCCATTGAAGAAATCTTTCA 526968 Query 7110 ACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 |||||| ||| || || || || || || || ||||| ||||||||||| || Sbjct 526967 ACATTTTTTGGATCTTGGGAATACGAGTGGAGCCACCAACCAAAACGATGTC 526916 >seq3 Length=6703989 Score = 113 bits (124), Expect = 6e-20 Identities = 203/291 (70%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| || | | ||||| || || | || |||||||| | || Sbjct 5819928 TCAAAATCTTCACCTCCAAGAAGAGTATCTCCATTTGTTGACTTTACTTCAAACACAC-- 5819985 Query 7517 CCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 ||||| ||| | | ||| |||| ||| || ||||||||||| ||||| | | | || Sbjct 5819986 CCTTCTGAATTTCAAGCAATGAAATATCGAAGGTACCACCACCAAGGTCGTACACGGCTA 5820045 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | |||| || || |||||| | || || || | || ||||| || |||| Sbjct 5820046 TAATTTTATCTTC-----TG-ACTTATCCATGCCATAAGCAAGGGCAGCCGCTGTAGGTT 5820099 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 |||| |||| ||| ||| |||| |||| ||| | ||| ||||| || || ||||| Sbjct 5820100 CATTGATAACACGTAGAACATTCAACCCAGAAAT-CTGGCCGGCATCCTTTGTAGCTTGA 5820158 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744 ||||| ||||| |||||||| ||||| || ||||| || |||| ||||| Sbjct 5820159 CGTTGAGAATCATTAAAGTAAGCCGGAACTGTTACTACTGCGTTTTTGACT 5820209 >seq9 Length=6586237 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 ||| || || || | ||| | || || | ||||||| | || || ||| ||||| Sbjct 4798714 TCTCCCTATGAGTCTCTTAACGTCGAAGATTGTGTTTGTTGGATTGCTGGTCAACTGGTT 4798655 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || || ||||| | ||||| ||||| |||||||| |||||||||||||| Sbjct 4798654 CTTAGCGGCATCACCAATAAGTCTTTCATCGTTTTCAGTAAACGCTACGTACGATGGGGT 4798595 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||| || || |||||||| || |||||||| || || | |||| | |||||||| Sbjct 4798594 GATTCTGTTGCCCTGGTCGTTGGCTATAATTTCAACCCGCCCATTTTTAAACACGCCGAC 4798535 Query 8113 GC 8114 || Sbjct 4798534 GC 4798533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || |||||||| ||| ||||||| || ||||||| || || | ||||| || || || Sbjct 4799257 AGACCAGCAATGGTTCCCGCATCCTTGGTCGCTTTTCTCTGGGCGTCGTTGAAATAAGCT 4799198 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 || ||||| || || || | |||||||||||| || | ||| | ||| || | |||||| Sbjct 4799197 GGCACCGTCACCACTGCATGCGTGACTTTCTTGCCCAAATAAGCTTCAGCCGTTTCTTTC 4799138 Query 7778 ATTTT 7782 ||||| Sbjct 4799137 ATTTT 4799133 >seq303 Length=8333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 8011 AAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTC 8070 ||| | ||||| ||||| |||||||| |||||||||||||| ||| || || ||||| Sbjct 1 AAGTCTTTCATCGTTTTCAGTAAACGCTACGTACGATGGGGTGATTCTGTTGCCCTGGTC 60 Query 8071 GTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 ||| || |||||||| || || | |||| | |||||||||| Sbjct 61 GTTGGCTATAATTTCAACCCGCCCATTTTTAAACACGCCGACGC 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122701388480