Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 9e-11 >seq2 Length=7758925 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| |||||| | || || || || | | | |||||||| || |||||||| || || || Sbjct 5569742 GTATATGTTACTTGTATAAGGCTCAATAGATTCATTGTTACCAAGGATTTGAGCGGTAGA 5569801 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||| ||||||||||| || ||||||||||| Sbjct 5569802 TGCTGTTGGCATGGGAGCAATAAGAAGACTGTT 5569834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966635281600