Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 >seq5 Length=5035970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 |||| |||||| | ||| ||||||||||| ||||||| ||||| |||||||| | Sbjct 3960282 AGGTTGGTCTATGCAGACCTGGTGACTATGGTAGCGATGTATCCCATCTCAACTTACACA 3960341 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA 159784 |||| |||||||| || ||||| ||||| || ||||| | || ||||| || || ||| Sbjct 3960342 AGACCTTCTGTATACCCCATGGGGGTGGGGGGCCTGGTATGGGACCTATAGGGGT--CAA 3960399 Query 159785 AA 159786 || Sbjct 3960400 AA 3960401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588041849985920