Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1158 114 3e-20 seq10 102 2e-16 >seq1158 Length=770266 Score = 114 bits (126), Expect = 3e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | |||||||||||||||||| || || ||||||||| || || Sbjct 340251 TCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGT 340310 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| || Sbjct 340311 GCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCC 340370 Query 195039 T 195039 | Sbjct 340371 T 340371 Score = 111 bits (122), Expect = 3e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| ||||||||||| || ||||||||| || || Sbjct 337694 TCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGT 337753 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||||||||| ||||||||||| ||||| || |||||||| || || Sbjct 337754 GCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCC 337813 Query 195039 T 195039 | Sbjct 337814 T 337814 Score = 111 bits (122), Expect = 3e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| ||||||||||| || ||||||||| || || Sbjct 341055 TCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGT 341114 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| ||||||||||| ||||| || ||||| || || || Sbjct 341115 ACGTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 341174 Query 195039 T 195039 | Sbjct 341175 T 341175 Score = 111 bits (122), Expect = 3e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| |||||||| || || ||||||||| || || Sbjct 341414 TCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGT 341473 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 341474 ACGTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGAATTCC 341533 Query 195039 T 195039 | Sbjct 341534 T 341534 Score = 107 bits (118), Expect = 4e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||||||||| || ||||||||| || || | || ||||| Sbjct 338139 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 338198 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 338199 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 338247 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | |||||||||||||||||| || || ||||||||| || || Sbjct 339095 TCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGT 339154 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||||||||| ||||||||||| ||||| || ||||| || || || Sbjct 339155 GCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 339214 Query 195039 T 195039 | Sbjct 339215 T 339215 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| |||||||| || || ||||||||| || || Sbjct 341858 TCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGT 341917 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| ||||||||||| ||||| || ||||| || || || Sbjct 341918 GCGTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCC 341977 Query 195039 T 195039 | Sbjct 341978 T 341978 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||||||||| || ||||||||| || || | || ||||| Sbjct 338582 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCGTCTTC 338641 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||||||| ||||||||||| ||||| || ||||| || || ||| Sbjct 338642 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 338690 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| |||||||| || || ||||||||| || || Sbjct 340697 TCTGAGACGAAGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGT 340756 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||||||||| ||||||||||| ||||| || ||||| || || || Sbjct 340757 GCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 340816 Query 195039 T 195039 | Sbjct 340817 T 340817 Score = 93.3 bits (102), Expect = 9e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| ||||| || || || ||||||||| || || Sbjct 337336 TCTGAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGTGT 337395 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||||||||| || |||||||| ||||| || ||||| || || || Sbjct 337396 GCGTCCGTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATTCC 337455 Query 195039 T 195039 | Sbjct 337456 T 337456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||||||||||||||| || |||||||| ||||| | || ||| || |||||| Sbjct 340945 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTGTCAATAGAATCAGAAGCCTCAACTTCA 341004 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||||||||||||||||| || || | ||||||| Sbjct 341005 AGAGTGATAGTCTTTCCTGTCAAAGTTTTGACAAAGATTTGCATT 341049 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||||||||||||||| || |||||||| ||||| | || ||| || |||||| Sbjct 341304 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTGTCAATAGAATCAGAAGCCTCAACTTCA 341363 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||||||||||||||||| || || | ||||||| Sbjct 341364 AGAGTGATAGTCTTTCCTGTCAAAGTTTTGACAAAGATTTGCATT 341408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || || ||||||||| ||||| | ||| || || |||||| Sbjct 340587 CCTTCTTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGAGTCAGATGCCTCAACTTCA 340646 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||||| ||||||||||| || || | ||||||| Sbjct 340647 AGAGTGATGGTCTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 340691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || || |||||||| ||||| | ||| || || |||||| Sbjct 341748 CCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATAGAGTCAGATGCCTCAACTTCA 341807 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||||||||||||||||| || || | ||||||| Sbjct 341808 AGAGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATTTGCATT 341852 >seq10 Length=4880875 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||||||||||||||||| ||||| || || |||||||| | ||| Sbjct 829577 TCTCAATCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTCAAAGT 829518 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || ||||| || |||||||| | || |||||| || |||||||| || Sbjct 829517 TCGTCCATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCC 829458 Query 195039 T 195039 | Sbjct 829457 T 829457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109463518223624