Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq1212 82.4 9e-11 >seq2 Length=7758925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || || ||||| || || || || | | ||||| ||||||||||| || || |||||| Sbjct 5569713 TGGAACTCTCCCGACAGAACCCTTCTCGTGTATATGTTACTTGTATAAGGCTCAATAGAT 5569772 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CT 47446 ||||| || |||| |||||||| || |||||||| ||||||| |||| ||| ||| || Sbjct 5569773 TCATTGTTACCAAGGATTTGAGCGGTAGATGCTGTTGGCATGGGAGCAA-TAAGAAGACT 5569831 Query 47447 ATTTCTTACTCCATAT 47462 || || | |||||| Sbjct 5569832 GTTCCTGATGCCATAT 5569847 >seq1212 Length=378467 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 19216 TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 |||| |||||| ||| ||||| | || | || ||||| || ||||| ||||| Sbjct 239573 TCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCAGAATGTATATTC 239632 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| ||||||||||| || ||| ||||||| |||||||| || ||||| Sbjct 239633 TCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGAACTTC 239685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099862470080