Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1231 178 1e-38 seq1182 167 2e-35 seq3 125 6e-23 seq1204 89.7 4e-12 >seq1231 Length=98070 Score = 178 bits (196), Expect = 1e-38 Identities = 364/541 (67%), Gaps = 0/541 (0%) Strand=Plus/Plus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 |||| || ||| | ||||| || ||| || ||||| || | | |||| ||||| | Sbjct 75259 TAGGAATCGATCTGGGAACAACGTATTCATGCGTTGGCGTCTTCCGCCATGGCAAAGTCG 75318 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 | ||||||||||| || |||||||| |||||||| ||| ||||| | |||| |||| Sbjct 75319 AGATTATTGCCAACGACCAAGGTAATAGAACTACACCAAGCTATGTCGCATTCAACGAAA 75378 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTA 550175 | ||| || | ||||||| || ||| | |||| | | ||||| ||| | | Sbjct 75379 CAGAAAGGTTGATCGGTGATGGGGCCAAAGACCAAGTTGCCAGAAATCCCGAAAATTCAA 75438 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 ||||||| || || | || |||||||||| || || ||| | |||| ||| |||| Sbjct 75439 TTTTTGACGCAAAGAGATTGATTGGAAGAAATTACAACGATCCAGCTGTACAGAAGGATA 75498 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTC 550295 | || ||||||||| | | || ||| ||||||||| | | || |||| Sbjct 75499 AAGAACACTGGCCTTTCAAGGTAGTAAATAAGAATGGAAAACCATTTCTTCAAGCGGAAT 75558 Query 550296 ATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAA 550355 || |||| || || |||||||| || |||| | |||||| | | || | Sbjct 75559 ATCAAGGCGACGTGAAGACGTTTTCACCCGAGGAAATCAGTGCAATGGTTCTTACTAAGA 75618 Query 550356 TGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTAC 550415 |||| | || || || | | ||| || | || | ||| || || ||||| |||| Sbjct 75619 TGAAGGACACTGCGGAAGCATACCTCGGTGAAAATGTAAAGGACGCGGTTATAACAGTAC 75678 Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 | || || || || ||||||||||| ||||| || ||||| ||||| || || |||| Sbjct 75679 CTGCTTACTTCAACGACTCACAACGACAAGCAACAAAAGACGCTGGCATCATCGCAGGAC 75738 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535 | || || || | | || || ||||| || || || ||| | || || ||||| |||| Sbjct 75739 TGAACGTACTCAGAGTGATAAACGAACCCACAGCAGCGGCATTGGCGTACGGACTCGATA 75798 Query 550536 A 550536 | Sbjct 75799 A 75799 >seq1182 Length=543332 Score = 167 bits (184), Expect = 2e-35 Identities = 321/471 (68%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 552129 GTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGT 552188 |||||||| || || | ||||| || || | ||||||| | || |||||||| Sbjct 526928 GTTGGTGGCTCCACTCGTATTCCCAAGATCCAAAAAATGTTGAAAGATTTCTTCAATGGA 526987 Query 552189 AAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAA 552248 || |||| || || | | || |||||||| ||||| || |||||||| || |||| Sbjct 526988 AAGGAATTGAACAAATCTATCAACCCAGATGAAGCTGTCGCTTATGGTGCAGCCGTTCAG 527047 Query 552249 GCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAG-ATGT 552307 |||||||||||| |||| | | ||| | | || || || | ||||| | |||| Sbjct 527048 GCAGCTATTCTTAGTGGAGATAAATCGGAAGAGGTTCAGGATCTTCT-CTTGTTGGATGT 527106 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 | | ||| ||||||||||| | || || | |||||| | ||||| | | ||| | || Sbjct 527107 TGCACCTTTATCTCTTGGTATTGAGACCGCTGGAGGAGTGATGACAGCTTTGATCAAGAG 527166 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 ||| |||||| | || ||| |||| | |||| | || || || || || ||| | Sbjct 527167 AAACACTACTGTCCCAACCAAACAATCCCAAATATTCACCACTTACTCGGACAACCAACC 527226 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 | ||| || ||| | | || || ||| | | | || || || || || ||| Sbjct 527227 AGGTGTGTTGATCCAAGTGTACGAGGGTGAACGTACGATGACCAAGGACAACAACATACT 527286 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 ||||| || | | || || || ||||| ||||||||||| || || ||||| || Sbjct 527287 TGGTAAGTTCGAGCTCTCCGGCATCCCCCCTGCACCTCGTGGAGTTCCACAGATTGAGGT 527346 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || |||||||||||||| || || || |||||||| ||||| ||| || Sbjct 527347 GACATTCGATATCGATGCTAACGGTATCTTGAATGTATCTGCTGTTGACAA 527397 Score = 123 bits (136), Expect = 2e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| ||||| || |||||| | | ||||||| |||| || || | | | Sbjct 525516 CCGGAAGAAATTAGTTCCATGGTTCTTCTTCGAATGAAAGAAACCGCTGAAGCATATCTC 525575 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 ||| || | | || |||||||| | || ||||| || ||||| || || |||||| | Sbjct 525576 GGTAAAACAATCACCGATGCAGTGGTTACAGTACCTGCTTATTTCAACGATTCACAAAGA 525635 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || |||||||| ||| ||| |||| || ||||||||| | ||||||||||| Sbjct 525636 CAAGCCACCAAAGATGCAGGAACCATTTCTGGTCTCAATGTTCTTAGAATTATCAATGAG 525695 Query 550502 CCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| ||||| |||||||||| Sbjct 525696 CCAACTGCAGCTGCCATTGCATATGG 525721 >seq3 Length=6703989 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 |||||| |||| || || || || |||||||| || |||||||||||||| || ||||| Sbjct 5820199 GCAGTAGTAACAGTTCCGGCTTACTTTAATGATTCTCAACGTCAAGCTACAAAGGATGCC 5820140 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||| |||| | |||||||| ||| |||||||||||||||| || ||||| ||| Sbjct 5820139 GGCCAGATTTCTGGGTTGAATGTTCTACGTGTTATCAATGAACCTACAGCGGCTGCCCTT 5820080 Query 550520 GCATATGGACTTGATAA 550536 || ||||| | ||||| Sbjct 5820079 GCTTATGGCATGGATAA 5820063 >seq1204 Length=744171 Score = 89.7 bits (98), Expect = 4e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 370658 TGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGATAGAAA 370717 ||| ||||| ||||||||||| |||| |||||| || ||||||| |||||||| | ||| Sbjct 197400 TGAAGATGAGATTAAAAAAGCTTACAGAAAACTTGCTTTGAAATACCATCCTGACAAAAA 197341 Query 370718 CAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTT 370754 ||| ||| | ||||| |||||||||||| | ||| Sbjct 197340 CAAGAGTGCAAGCGCTGAGGAAAAGTTTAAAGAGATT 197304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029228730903280