Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1212 82.4 9e-11 >seq1212 Length=378467 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||||||||| ||||||| ||||| || || || | | | ||| ||||| ||| Sbjct 237534 TTAAAAATCTGCATCTAATGTAAACTTCATATCTTCAGCCTTGGCCATTACTCCAGCTTT 237593 Query 36887 TTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 ||||||||| ||||| | |||| || || || || |||||||| || || ||||| | Sbjct 237594 TTGATATTCCCCAAC-CCTCTTCTCAAAGAAGTTGGTCTTTCCCTCAAGCGATATTAACT 237652 Query 36946 CCATAAAATCAAATGGATT 36964 |||| || |||||||| || Sbjct 237653 CCATGAAGTCAAATGGGTT 237671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592307382162880