Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1158 84.2 2e-11 seq4 84.2 2e-11 >seq1158 Length=770266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 |||||||| |||||||| || ||| ||| | || | || |||||| | || |||||| Sbjct 337584 CCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATAGAGTCAGATGCCTCAACTTCA 337643 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 337644 AGAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 337687 >seq4 Length=5505748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 ||||||| |||||||||||| | ||||| |||| ||||| |||||||| ||||| | Sbjct 3574441 CTTTTTGAATATTGTAATCGCTAAGTGTTCTTCCATCCTCCAACTGCTTACCAGCAAAAA 3574500 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||||||| || ||||| || ||||| ||| Sbjct 3574501 TCAAACGTTGCTGATCAGGTGGAATACCT 3574529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396272256694104