Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1212 84.2 4e-11 >seq1212 Length=378467 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| | || ||||| | | || ||||| |||| || ||||||||||||||||||| Sbjct 239233 CTACCTATGCTGAGCGAATTATTGCTTTTGCCTCTGTTGAAGGCATCTTTTTCAGCGGTT 239174 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | ||||| |||||||||||| | || || || |||||||| || ||||| | Sbjct 239173 CCTTTGCCGCCATCTTCTGGTTGAAAAAGCGAGGTCTGATGCCCGGACTCACTTTTTCAA 239114 Query 25985 ACGAGCTCATCAGCAGGGACGAGG 26008 | || || || ||||| || |||| Sbjct 239113 ATGAACTGATTAGCAGAGATGAGG 239090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830031367680