Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1231 181 7e-40 seq1182 138 7e-27 seq3 118 7e-21 seq1204 95.1 8e-14 seq9 91.5 1e-12 >seq1231 Length=98070 Score = 181 bits (200), Expect = 7e-40 Identities = 370/544 (68%), Gaps = 12/544 (2%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||| || || |||||||| ||||||||||||||||| |||||| ||||| Sbjct 75307 ATGGCAAAGTCGAGATTATTGCCAACGACCAAGGTAATAGAACTACACCAAGCTATGTCG 75366 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || | ||||| ||| | || || |||| || ||| | |||| ||| |||| Sbjct 75367 CATTCAACGAAACAGAAAGGTTGATCGGTGATGGGGCCAAAGACCAAGTTGCCAGAAATC 75426 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | | ||| | |||||||| || || ||||||||||| | |||| | ||| | ||| Sbjct 75427 CCGAAAATTCAATTTTTGACGCAAAGAGATTGATTGGAAGAAATTACAACGATCCAGCTG 75486 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 | || |||| || |||||||| ||||| ||||| ||| ||||||| | Sbjct 75487 TACAGAAGGATAAAGAACACTGGCCTTTCAAGGTAGTAAATAAGAATGGAAAACCATTTC 75546 Query 474621 TAGAAGC--AATA-CACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAA 474677 | |||| |||| || ||| || || |||||||| || |||| | ||| Sbjct 75547 TTCAAGCGGAATATCA---AGGCGACGTGAAGACGTTTTCACCCGAGGAAATCAGTGCAA 75603 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATG 474737 ||||| | | || ||||| | || ||| |||| || || || | |||| || | Sbjct 75604 TGGTTCTTACTAAGATGAAGGACACTGCGGAAGCATACCTCGGTGAAAATGTAAAGGACG 75663 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 | || || || || || || || || || || || ||||| |||||||| ||||| || | Sbjct 75664 CGGTTATAACAGTACCTGCTTACTTCAACGACTCACAACGACAAGCAACAAAAGACGCTG 75723 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | | || ||||| || || || | | | || || ||||| |||||||| ||| | | Sbjct 75724 GCATCATCGCAGGACTGAACGTACTCAGAGTGATAAACGAACCCACAGCAGCGGCATTGG 75783 Query 474858 CTTATGGTCTTGATAAGAATT---CTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTG 474914 | || || || |||||||| | ||| | |||| ||| |||||||| || ||| || Sbjct 75784 CGTACGGACTCGATAAGAACTTGGCTGGC-GAGAA--AAAGGTTTTAATTTTCGATCTTG 75840 Query 474915 GAGG 474918 | || Sbjct 75841 GCGG 75844 Score = 143 bits (158), Expect = 2e-28 Identities = 514/797 (64%), Gaps = 14/797 (2%) Strand=Plus/Plus Query 475365 CAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATG 475422 |||| ||||| || | |||||||| || || || || ||||| || | || | ||| Sbjct 75904 CAACTGCTGGGGACACCCATCTTGGCGGAGAGGACTTCGATAACCGAATGGTGAAGCAT- 75962 Query 475423 GTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATT 475482 | |||||| |||||| | ||| | ||| || | |||| | | ||| | Sbjct 75963 -TTCACTGAAGAGTTCAAGCGAAAACACAAAAAGGACATCTCAAAGAGTAACAGGGCAAT 76021 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 ||| | | | || || ||||| || |||||||| | || || | | || || | Sbjct 76022 TAGAAGATTACGGACGGCCTGTGAGCGAGCTAAGCGCGTCCTCTCAACCTCGACAGAAGC 76081 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | |||| || | |||||||| | ||||||||||||| | | | || |||| || Sbjct 76082 TGCTGTCGAGTTGGATTCTCTATACGAAGGAATTGATTTCTACAGTAAAATCTCAAGAGC 76141 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 | ||| ||||| | || || |||||||| | |||| || || ||| ||| Sbjct 76142 AAGATTCGAAGAACTGTGCTCCGATCTCTTCCGTTCCTGTCTTGACCCTGTCGAAAAAGC 76201 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 ||| |||||| |||| || || ||| | | || | ||| |||||||||| ||||| || Sbjct 76202 TCTAAGAGATGCTAAGCTAGATAAAACGAAGATCGACGAAGTTGTTCTTGTCGGAGGATC 76261 Query 475723 AACAAGAATTCCAAAAAT--AAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTA 475780 ||| || || || | | || || | | | || | ||||| || ||||| | Sbjct 76262 AACCAGGATCCCGAGGGTGCAAAAGTTACTCAGTGAT--TTCTTTAACGGAAAAAATCTT 76319 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || || | || || || ||||| ||||| || || ||||| || || || || | Sbjct 76320 AACAAATCAATCAACCCCGACGAAGCAGTTGCCTACGGTGCTGCGGTGCAGGCGGCAGTG 76379 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 | |||| | || | || ||| | || | |||| | || ||||| | || || Sbjct 76380 CTTACAGGCAACTCCGGCGTGAA---AGAT-GTGTTGT--TGGTCGACGTTGCACCTCTA 76433 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 || || || |||| |||| || | ||| ||||| || || | || |||| || Sbjct 76434 TCGTTGGGAATTGAGACAGCCGGCGAGATGATGACAAAGCTGGTGGAACGAAACACAAGA 76493 Query 475961 ATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 |||||| ||| | ||| | || || |||| || ||||||||||| | | || || Sbjct 76494 ATCCCACACAATACTTCACAGGTGTTCACCACGTACGCTGATAATCAACCTGCCGTCACA 76553 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || ||| | | ||||| ||| || | || ||| |||| || || ||||| ||| Sbjct 76554 ATTCAAGTTTACGAAGGCGAACGAGCACAGACGAAACATAACAATCTGCTCGGAACATTT 76613 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 || || || || | || || || ||||| || || | || ||||| | ||||| Sbjct 76614 AACCTCACTGGAATAGCACCAGCACCAAGAGGTGTGCCAAAGATCAAAGTTTCGTTTGAC 76673 Query 476141 ATTGATGCAAATGGTAT 476157 || || |||||||| || Sbjct 76674 ATCGACGCAAATGGAAT 76690 >seq1182 Length=543332 Score = 138 bits (152), Expect = 7e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 |||||||||||| || | |||||| ||||| ||| |||||| | ||||||| Sbjct 525495 GGTGAAACTAAAACTTTCTTCCCGGAAGAAATTAGTTCCATGGTTCTTCTTCGAATGAAA 525554 Query 474698 CAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCA 474757 ||||||| ||||||| || || | | || |||||||| |||| || || || Sbjct 525555 GAAACCGCTGAAGCATATCTCGGTAAAACAATCACCGATGCAGTGGTTACAGTACCTGCT 525614 Query 474758 TATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAAT 474817 ||||| || ||||| ||| | ||||| || |||||||| |||| ||| | ||||| ||| Sbjct 525615 TATTTCAACGATTCACAAAGACAAGCCACCAAAGATGCAGGAACCATTTCTGGTCTCAAT 525674 Query 474818 GTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| | | ||||| ||||| ||||| ||||| || |||| |||||| | || || || Sbjct 525675 GTTCTTAGAATTATCAATGAGCCAACTGCAGCTGCCATTGCATATGGTTTAGACAAAAA 525733 Score = 122 bits (134), Expect = 6e-22 Identities = 326/490 (67%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 475697 CATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCA 475756 || || || ||| | || || || || || | ||||| || || | ||||| || | Sbjct 526913 CACGACATCGTTTTGGTTGGTGGCTCCACTCGTATTCCCAAGATCCAAAAAATG-TTGAA 526971 Query 475757 TCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATA 475815 || | || ||||| || | || || || | | || || ||||||||||| || || Sbjct 526972 AGATTTCTTCAATGGAAAGGAATTGAACAAATCTATCAACCCAGATGAAGCTGTCGCTTA 527031 Query 475816 TGGAGCTGCTGTCCAAGCAGCTATT-TTA--TCAGGTCAATCAGACGAGAAACTAAATAA 475872 ||| || || || || ||||||||| ||| || | |||| || ||| | | | Sbjct 527032 TGGTGCAGCCGTTCAGGCAGCTATTCTTAGTGGAGATAAATCGGAAGAG---GTTCAGGA 527088 Query 475873 TATTGTACTTGTT-GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 | || | |||||| || || | || | || | ||| |||| || | |||||| | | Sbjct 527089 TCTTCT-CTTGTTGGATGTTGCACCTTTATCTCTTGGTATTGAGACCGCTGGAGGAGTGA 527147 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991 |||| | | || | ||||| ||| || ||||| |||| |||| || |||| ||| Sbjct 527148 TGACAGCTTTGATCAAGAGAAACACTACTGTCCCAACCAAACAATCCCAAATATTCACCA 527207 Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051 |||| || || || ||| || ||| |||||| | | || |||||| | | | | Sbjct 527208 CTTACTCGGACAACCAACCAGGTGTGTTGATCCAAGTGTACGAGGGTGAACGTACGATGA 527267 Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111 | || || || |||| |||||| | || | || || || || ||||| || | | Sbjct 527268 CCAAGGACAACAACATACTTGGTAAGTTCGAGCTCTCCGGCATCCCCCCTGCACCTCGTG 527327 Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTG 476171 ||||||| || ||||| || || || ||||| ||||| || ||||| | ||||| ||| Sbjct 527328 GAGTTCCACAGATTGAGGTGACATTCGATATCGATGCTAACGGTATCTTGAATGTATCTG 527387 Query 476172 CTTGTGATAA 476181 || ||| || Sbjct 527388 CTGTTGACAA 527397 >seq3 Length=6703989 Score = 118 bits (130), Expect = 7e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 |||||| | || ||||| || || ||||||||||||||||||||||| || || ||||| Sbjct 5820199 GCAGTAGTAACAGTTCCGGCTTACTTTAATGATTCTCAACGTCAAGCTACAAAGGATGCC 5820140 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||| | || | |||||| ||||| |||| |||||||| ||||| || || ||| Sbjct 5820139 GGCCAGATTTCTGGGTTGAATGTTCTACGTGTTATCAATGAACCTACAGCGGCTGCCCTT 5820080 Query 474857 GCTTATGGTCTTGATAAG 474874 |||||||| | |||||| Sbjct 5820079 GCTTATGGCATGGATAAG 5820062 >seq1204 Length=744171 Score = 95.1 bits (104), Expect = 8e-14 Identities = 129/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 299113 TGAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAA 299172 |||||| ||||||||||||||||| | |||| | ||| ||||||| |||||||||| ||| Sbjct 197400 TGAAGATGAGATTAAAAAAGCTTACAGAAAACTTGCTTTGAAATACCATCCTGACAAAAA 197341 Query 299173 TAAAAGTCCTGAAGCG--GAAGAAAAGTTTaaaaaaaTAAGTCATGCTTAT--AGTATTC 299228 || ||| | ||||| || |||||||||||| | || | | |||||| |||| | Sbjct 197340 CAAGAGTGC--AAGCGCTGAGGAAAAGTTTAAAGAGATTGCTGAGGCTTATGAAGTA--C 197285 Query 299229 TTTCAGATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAAT 299284 || || || ||||| || | ||||| | ||||||| |||| || ||| Sbjct 197284 TTAGCGACCCTGAGAAAAAGAAAATGTATGACACTCATGGAGAACAAGGGTTGAAT 197229 >seq9 Length=6586237 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 474380 AATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTT 474439 ||||| ||| || || ||||||||||||||||| || | | || ||||||||||| Sbjct 5102367 AATGGACGAGTGGAGATCATTGCCAATGACCAAGGAAACCGTATTACCCCATCATATGTG 5102308 Query 474440 TCTTTTACTG---AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 |||| |||| | ||| | ||||| |||||||||||||| ||||| | | || Sbjct 5102307 GCTTTCACTGCGGAGGGTGATCGACTTATCGGAGATGCTGCTAAGAATCAACTTACCTCC 5102248 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || || | ||||| |||| || || || ||||| ||||| || Sbjct 5102247 AACCCAGAAAATACCGTTTTCGACGCAAAGAGATTAATTGGCCG 5102204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268124637748256