Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 >seq5 Length=5035970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 138176 TTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGT 138235 ||||| || || ||||| || | ||||| || ||||| ||||| || |||||||| || Sbjct 3960401 TTTTG--ACCCCTATAGGTCCCATACCAGGCCCCCCACCCCCATGGGGTATACAGAAGGT 3960344 Query 138236 CTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTAC 138295 ||| ||||| || ||||| ||||||| ||||||||||| ||| | |||||| || Sbjct 3960343 CTTGTGTAAGTTGAGATGGGATACATCGCTACCATAGTCACCAGGTCTGCATAGACCAAC 3960284 Query 138296 CT 138297 || Sbjct 3960283 CT 3960282 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| | ||| | | | |||||||| || || |||||||| |||||||| ||| Sbjct 3955779 CCATGATACACAGCAAACATGGCGGACATATTAGCAAGTAGTGCTTGAGCTGTGCATATG 3955720 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGC 139381 ||| || ||||| ||| | ||| ||||||||||| ||||||| ||| Sbjct 3955719 TTAGATGTCGCTTTTGCTCGACGAATGTGCTGCTCTCTTGTTTGTAATGC 3955670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989193925440