Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq13 84.2 3e-11 >seq13 Length=1792679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 ||| | |||||| |||||| ||||| ||||||||| ||| || | ||| || || | Sbjct 68112 ACCTCTTCTTGGGCTTTCATGGTTAAACAGAATACCATTACTTGCGTGCATGCCATACGC 68053 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 ||||| |||||| ||||||||||| | || | ||||| || |||| || || || Sbjct 68052 CTCACGGTAGTTCACAACTATCCAGTATGCGTACACCTTTGCGGCAGCATACGGGGATCG 67993 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 || || || || || |||||| | || || | || || |||| Sbjct 67992 AGGGTAAAACGGGGTCGTCTCTTTTTGCGGGATTTCCTGGACCT 67949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483818639040