Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1212 84.2 3e-11 seq2 84.2 3e-11 >seq1212 Length=378467 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 65074 GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC 65133 || ||||| || |||| ||||| | ||| || || ||||| ||| ||| || || | Sbjct 239225 GCTGAGCGAATTATTGCTTTTGCCTCTGTTGAAGGCATCTTTTTCAGCGGTTCCTTTGCC 239166 Query 65134 GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTT 65193 || || | |||||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 239165 GCCATCTTCTGGTTGAAAAAGCGAGGTCTGATGCCCGGACTCACTTTTTCAAATGAACTG 239106 Query 65194 ATTTCCCGAGATGAGG 65209 ||| | ||||||||| Sbjct 239105 ATTAGCAGAGATGAGG 239090 >seq2 Length=7758925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 ||||||||| | || || || ||||||||||| || ||||| |||||| | ||||| ||| Sbjct 5569834 AACAGTCTTCTTATTGCTCCCATGCCAACAGCATCTACCGCTCAAATCCTTGGTAACAAT 5569775 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAG 76596 |||| |||| || || |||| ||||| ||| |||||| Sbjct 5569774 GAATCTATTGAGCCTTATACAAGTAACATATACACGAGAAG 5569734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560114543360