Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 3e-15 >seq9 Length=6586237 Score = 98.7 bits (108), Expect = 3e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 106916 GACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCT 106975 ||||||||||| || ||||| || || | || |||||||| | ||| || || Sbjct 1099158 GACGAACTCATGCCGTAGAATAATTTCACTTTCTTACCATCCTTAAGAATAGTCTCGCCA 1099217 Query 106976 GGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCG 107035 | || ||| || || ||||| | |||||||| ||| || ||||||||||| |||| Sbjct 1099218 CCAGATTGATCATGACCAGCAAACAGACCGCCAATCATAACAAAATCAGCCCCTGCACCA 1099277 Query 107036 AATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATAT 107087 ||||||||||||| ||| || || |||||| || ||||| ||||||| Sbjct 1099278 AATGCTTTAGCCACATCCCCTGGACAAGTACACCCCCCATCTGATATAATAT 1099329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471793613052664