Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq1158 84.2 2e-11 >seq10 Length=4880875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| ||||| | ||||| | ||||| ||||||||||| || ||||| ||||| | | Sbjct 829582 CCTCCTCTCAATCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTC 829523 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | || ||| || ||||| |||||||| | ||||||||||| ||||| || || Sbjct 829522 AAAGTT-CGTCCATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGG 829464 Query 29679 AATACC 29684 ||| || Sbjct 829463 AATTCC 829458 >seq1158 Length=770266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||||||||| ||| || | ||||||| | || | || |||||| || ||| Sbjct 337582 TACCTTCTTTGTCTTG-AATCTTGGCTTTGACATTGTCAATAGAGTCAGATGCCTCAACT 337640 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||| ||||| || ||||| ||||| || |||||| Sbjct 337641 TCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 337688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 |||| ||||||||||| | || |||||| | || | || |||||| || |||| Sbjct 342205 TACCTTCTTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGAGTCAGATGCCTCAACTT 342264 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 |||||||||| || || ||||| || ||||| ||||| ||||||||| || Sbjct 342265 CAAGAGTTATGGTCTTTCCAGTCAAAGTTTTCACAAAGATCTGCATTCTA 342314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385213228139352