Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1231 233 1e-55 seq1182 165 6e-35 seq9 98.7 7e-15 >seq1231 Length=98070 Score = 233 bits (258), Expect = 1e-55 Identities = 930/1448 (64%), Gaps = 33/1448 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || ||||| || || | ||||| | |||| || | || || ||||| | || ||| Sbjct 76690 ATTCCATTTGCGTCGATGTCAAACGAAACTTTGATCTTTGGCACACCTCTTGGTGCTGGT 76631 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 | || || | ||||||||||| || ||| |||| ||| || | |||||| Sbjct 76630 GCTATTCCAGTGAGGTTAAATGTTCCGAGCAGATTGTTATGTTTCGTCTGTGCTCGTTCG 76571 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||| ||| ||| || || || ||| ||||||||| | || || || || || ||| Sbjct 76570 CCTTCGTAAACTTGAATTGTGACGGCAGGTTGATTATCAGCGTACGTGGTGAACAC-CTG 76512 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || | || || ||| ||||||||| || | | || ||||| || | || || Sbjct 76511 TGAAGTATTGTGTGGGATTCTTGTGTTTCGTTCCACCAGCTTTGTCATCATCTCGCCGGC 76452 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 ||| || | || | || ||||| | || || || | |||| | | ||| | Sbjct 76451 TGTCTCAATTCCCAACGATAGAGGTGCAACGTCGACCA--ACAACACATC----TTTCAC 76398 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 | | | || ||| | || || || | |||||||| || ||||| ||||| || Sbjct 76397 GCCGGAGTTGCCTGTAAGCACTGCCGCCTGCACCGCAGCACCGTAGGCAACTGCTTCGTC 76338 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC 281859 || || | | || || || ||||| || || || |||| || | | | || Sbjct 76337 GGGGTTGATTGATTTGTTAAGATTTTTTCCGTTAAAGAAATCACTGAGTAACTTTTGCAC 76278 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 | | || || | | ||||||||| || | |||| ||| | | || | |||||| || Sbjct 76277 CCTCGGGATCCTGGTTGATCCTCCGACAAGAACAACTTCGTCGATCTTCGTTTTATCTAG 76218 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 || | ||| || | ||||||| || || ||||||| | | || | || || || Sbjct 76217 CTTAGCATCTCTTAGAGCTTTTTCGACAGGGTCAAGACAGGAACGGAAGAGATCGGAGCA 76158 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGA-GTGACATTA-TAATCAATTCCTTCGAACAAA 282037 |||||||||||| | ||||| | ||| | || || |||||||||||||| | | | Sbjct 76157 CAGTTCTTCGAATCTTGCTCT--TGAGATTTTACTGTAGAAATCAATTCCTTCGTATAGA 76100 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 ||||| | || | | || || ||||| | || || | || ||||| || ||||| Sbjct 76099 GAATCCAACTCGACAGCAGCTTCTGTCGAGGTTGAGAGGACGCGCTTAGCTCGCTCACAG 76040 Query 282098 GCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTC 282155 || |||| || ||||| | | || || || |||| | || |||| | ||||| Sbjct 76039 GCCGTCCGTAATCTTCTAATTGCCCTGTTACTCTTTGA--GATGTCCTTTTTGTGTTTTC 75982 Query 282156 TCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 |||||| |||||| | ||| | || | || ||||| || || || || || | Sbjct 75981 GCTTGAACTCTTCAGTGAA--ATGCTTCACCATTCGGTTATCGAAGTCCTCTCCGCCAAG 75924 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCAA--GAGACAAA 282268 | || | || | || | |||| |||| ||| || || | | || | Sbjct 75923 ATGGGTGTCCCCAGCAGTTGAAAGAACTTCAAAAATTGATCCTTCGTCGATGGTGAGCAC 75864 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 282328 |||| ||||| |||||| || || | ||| ||||| | || || | || | Sbjct 75863 AGAG--ACATCGAAGGTTCCGCCGCCAAGATCGAAAATTAAAACCTTTTTCTCGCCAGCC 75806 Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 ||| ||||| || || ||||| || || || || || ||||| || || | ||| | Sbjct 75805 AAGTTCTTATCGAGTCCGTACGCCAATGCCGCTGCTGTGGGTTCGTTTATCACTCTGAGT 75746 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || || || || || | || || ||||| || ||||||| |||||| ||||| || Sbjct 75745 ACGTTCAGTCCTGCGATGATGCCAGCGTCTTTTGTTGCTTGTCGTTGTGAGTCGTTGAAG 75686 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 || ||||| || || ||||| || || |||| | || || | || || || || Sbjct 75685 TAAGCAGGTACTGTTATAACCGCGTCCTTTACATTTTCACCGAGGTATGCTTCCGCAGTG 75626 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA 282568 | ||||| ||| | | || ||||| |||| || || ||| | ||| || Sbjct 75625 TCCTTCATCTTAGTAAGAACCATTGCACTGATTTCCTCGGGTGAAAACGTCTTCACGTCG 75566 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT---TTAAATGGC 282625 ||||||| ||| || | ||||| || ||| ||| | ||| || || ||| Sbjct 75565 CCTTGATATTCCGCTTGAAGAAATGGT---TTTCCATTCTTATTTACTACCTTGAAAGGC 75509 Query 282626 CAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTT 282685 || | || |||| || ||| | | || || ||| ||| ||||| |||| ||| Sbjct 75508 CAGTGTTCTTTATCCTTCTGTACAGCTGGATCGTTGTAATTTCTTCCAATCAATCTCTTT 75449 Query 282686 GCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATC 282745 || |||||||| | ||| ||||| ||| |||| | |||||| |||| || ||| Sbjct 75448 GCGTCAAAAATTGAATTTTCGGGATTTCTGGCAACTTGGTCTTTGGCCCCATCACCGATC 75389 Query 282746 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 282805 | |||||| || | |||| ||||| ||| || || | ||||||||| || || Sbjct 75388 AACCTTTCTGTTTCGTTGAATGCGACATAGCTTGGTGTAGTTCTATTACCTTGGTCGTTG 75329 Query 282806 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 282865 |||||||| || ||||| |||| | | || || || || | | |||||||| | | Sbjct 75328 GCAATAATCTCGACTTTGCCATGGCGGAAGACGCCAACGCATGAATACGTTGTTCCCAGA 75269 Query 282866 TCAATACC 282873 || || || Sbjct 75268 TCGATTCC 75261 >seq1182 Length=543332 Score = 165 bits (182), Expect = 6e-35 Identities = 148/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| ||||| |||||||| ||||| |||||||| | |||| Sbjct 525733 TTTTTGTCTAAACCATATGCAATGGCAGCTGCAGTTGGCTCATTGATAATTCTAAGAACA 525674 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 525673 TTGAGACCAGAAATGGTTCCTGCATCTTTGGTGGCTTGTCTTTGTGAATCGTTGAAATAA 525614 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| || |||| || ||||| || | | ||| || | ||| || || |||| | Sbjct 525613 GCAGGTACTGTAACCACTGCATCGGTGATTGTTTTACCGAGATATGCTTCAGCGGTTTCT 525554 Query 282512 TTCATT 282517 |||||| Sbjct 525553 TTCATT 525548 Score = 145 bits (160), Expect = 6e-29 Identities = 323/485 (67%), Gaps = 0/485 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| ||||| | ||||| || ||||| | ||| ||||| || ||||| Sbjct 527397 TTGTCAACAGCAGATACATTCAAGATACCGTTAGCATCGATATCGAATGTCACCTCAATC 527338 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || || | | ||||| ||||| || | | || | || || | || Sbjct 527337 TGTGGAACTCCACGAGGTGCAGGGGGGATGCCGGAGAGCTCGAACTTACCAAGTATGTTG 527278 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | | |||||||||||| | | |||||| || | | ||| || Sbjct 527277 TTGTCCTTGGTCATCGTACGTTCACCCTCGTACACTTGGATCAACACACCTGGTTGGTTG 527218 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || ||||| || |||| | ||||| ||| || | || |||||||| | || Sbjct 527217 TCCGAGTAAGTGGTGAATATTTGGGATTGTTTGGTTGGGACAGTAGTGTTTCTCTTGATC 527158 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | | ||||| | || ||||| || || | ||||||||| | ||| | ||||| | Sbjct 527157 AAAGCTGTCATCACTCCTCCAGCGGTCTCAATACCAAGAGATAAAGGTGCAACATCCAAC 527098 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 | || || || |||| | ||| | | ||| |||||||||||| |||| || Sbjct 527097 AAGAGAAGATCCTGAACCTCTTCCGATTTATCTCCACTAAGAATAGCTGCCTGAACGGCT 527038 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||| || || | || || || | || || |||||||| Sbjct 527037 GCACCATAAGCGACAGCTTCATCTGGGTTGATAGATTTGTTCAATTCCTTTCCATTGAAG 526978 Query 281837 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 |||| | | | || | | ||| |||||||||| || || ||||| || || || Sbjct 526977 AAATCTTTCAACATTTTTTGGATCTTGGGAATACGAGTGGAGCCACCAACCAAAACGATG 526918 Query 281897 TCATG 281901 || || Sbjct 526917 TCGTG 526913 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||||||| ||||||| || ||||||||||| ||||| || ||| ||||||||| | || Sbjct 525726 CTAAACCATATGCAATGGCAGCTGCAGTTGGCTCATTGATAATTCTAAGAACATTGAGAC 525667 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | | ||| | | | ||| || |||||||| |||| || || ||||| || |||| Sbjct 525666 CAGAAATGGTTCCTGCATCTTTGGTGGCTTGTCTTTGTGAATCGTTGAAATAAGCAGGTA 525607 Query 86234 CAGTAATAACTGC 86246 | |||| ||||| Sbjct 525606 CTGTAACCACTGC 525594 >seq9 Length=6586237 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || || |||| |||| ||||||||||||| |||| ||||| || || ||| Sbjct 4799284 GGTTCGTTGATGATCCTCATAACAGTAAGACCAGCAATGGTTCCCGCATCCTTGGTCGCT 4799225 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 | ||| || | ||||| ||||| || || || || | || |||| || |||| || Sbjct 4799224 TTTCTCTGGGCGTCGTTGAAATAAGCTGGCACCGTCACCACTGCATGCGTGACTTTCTTG 4799165 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTAC 282521 || | |||||| || |||| ||||||||||| Sbjct 4799164 CCCAAATAAGCTTCAGCCGTTTCTTTCATTTTAC 4799131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740567950175472