Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 107 4e-18 seq1158 102 2e-16 >seq10 Length=4880875 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||||||| | || || | ||| ||||| ||||||||||| || || |||||| Sbjct 829583 ACCTCCTCTCAATCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACT 829524 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||| || ||||| ||||| || ||||| ||||| | |||||||||||| ||||| Sbjct 829523 CAAAGTTCGTCCATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGG 829464 Query 82703 TATTCCT 82709 |||||| Sbjct 829463 AATTCCT 829457 >seq1158 Length=770266 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||||||||| |||||||| |||||||| || || ||||| Sbjct 340692 CCTCCTCTGAGACGAAGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTC 340751 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| ||||| || | ||| |||||||| || Sbjct 340752 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGG 340811 Query 82704 ATTCCT 82709 |||||| Sbjct 340812 ATTCCT 340817 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 337331 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 337390 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||||||||| || | ||| |||||||| || Sbjct 337391 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 337450 Query 82704 ATTCCT 82709 |||||| Sbjct 337451 ATTCCT 337456 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| |||||||| ||||| || || || ||||| Sbjct 337689 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 337748 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| ||||| || | ||| ||||||||||| Sbjct 337749 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 337808 Query 82704 ATTCCT 82709 |||||| Sbjct 337809 ATTCCT 337814 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| |||||||| ||||| || || || ||||| Sbjct 338122 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTC 338181 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| ||||| || | ||| ||||||||||| Sbjct 338182 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGG 338241 Query 82704 ATTCCT 82709 |||||| Sbjct 338242 ATTCCT 338247 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||| || |||||||| || || ||||| Sbjct 340246 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTC 340305 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| ||||| || | |||||||||||| || Sbjct 340306 AGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGA 340365 Query 82704 ATTCCT 82709 |||||| Sbjct 340366 ATTCCT 340371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||||||||| ||||| || || ||||| | |||| || || ||||| Sbjct 340945 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTGTCAATAGAATCAGAAGCCTCAACTTCA 341004 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||| || ||||| |||||||| || || ||||| || |||||| Sbjct 341005 AGAGTGATAGTCTTTCCTGTCAAAGTTTTGACAAAGATTTGCATT 341049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||||||||| ||||| || || ||||| | |||| || || ||||| Sbjct 341304 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTGTCAATAGAATCAGAAGCCTCAACTTCA 341363 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||| || ||||| |||||||| || || ||||| || |||||| Sbjct 341364 AGAGTGATAGTCTTTCCTGTCAAAGTTTTGACAAAGATTTGCATT 341408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981811198671208