Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1158 95.1 3e-14 seq10 93.3 1e-13 >seq1158 Length=770266 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||||||| | || || |||||||||| Sbjct 341515 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTGAGCGATTACAAC 341456 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||||||||||||||| | ||| Sbjct 341455 ATCCAGAAAGAGTCTACTCTTCACTTGGTT 341426 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||||||| | || || |||||||||| Sbjct 341959 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGCACACTGAGCGATTACAAC 341900 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||||||||||||||| | ||| Sbjct 341899 ATCCAGAAAGAGTCTACTCTTCACTTGGTT 341870 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 340798 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAAC 340739 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||||||||||||||| | ||| Sbjct 340738 ATCCAGAAAGAGTCTACTCTTCACTTAGTT 340709 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||||||| | || || |||||||||| Sbjct 341156 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTGAGCGATTACAAC 341097 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||| |||||||||||||||||| | ||| Sbjct 341096 ATCCAAAAAGAGTCTACTCTTCACTTGGTT 341067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||||||||||||||||| || || || || || | ||||||||| Sbjct 341426 AACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTC 341485 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||||||||| ||||| ||| Sbjct 341486 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGA 341519 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||||||||||||||||| || || || || || | ||||||||| Sbjct 341870 AACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCATCTTC 341929 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||||||||| ||||| ||| Sbjct 341930 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGA 341963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 337795 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAAC 337736 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||| |||||||||||||||||| | ||| Sbjct 337735 ATCCAAAAAGAGTCTACTCTTCACTTGGTT 337706 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 338228 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAAC 338169 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||| |||||||||||||||||| | ||| Sbjct 338168 ATCCAAAAAGAGTCTACTCTTCACTTGGTT 338139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 338671 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGTACACTGAGCGATTACAAC 338612 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||| |||||||||||||||||| | ||| Sbjct 338611 ATCCAAAAAGAGTCTACTCTTCACTTGGTT 338582 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 339196 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAAC 339137 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||||| ||||||||| | ||| Sbjct 339136 ATCCAGAAAGAGTCCACTCTTCACTTGGTT 339107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| || |||||| | ||||| ||| | || || |||||||||| Sbjct 340352 CAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTGAGCGATTACAAC 340293 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||||| ||||||||| | ||| Sbjct 340292 ATCCAGAAAGAGTCCACTCTTCACTTGGTT 340263 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||| ||||||||||||| || || || || || | ||| ||||| Sbjct 340263 AACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 340322 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||||||||| ||||||||| Sbjct 340323 AAGCTGCTTACCAGCGAAGATAAGACGTTGTTGA 340356 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||||||||||||||||| || || || || || | ||| ||||| Sbjct 340709 AACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTC 340768 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||||||||| ||||| ||| Sbjct 340769 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGA 340802 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | |||||||||||||||||| |||| || || || || || | ||||||||| Sbjct 341067 AACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTC 341126 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||||||||| ||||| ||| Sbjct 341127 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGA 341160 >seq10 Length=4880875 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 |||||| | |||||||| || ||||| | ||||||||| | |||||| ||||||||| Sbjct 829476 CAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACGAACTTTGAGTGATTACAAC 829535 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||| || |||||||||||||| Sbjct 829536 ATCCAGAAAGAATCCACTCTTCACCTTGT 829564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| || |||||||||| || || ||| |||||| | ||||||||| Sbjct 829564 ACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTCAAAGTTCGTCCATCTTCA 829505 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| || |||||||| | | ||||||| Sbjct 829504 AGTTGCTTGCCAGCGAAGATCAATCTTTGTTGA 829472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181801539275512