Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq10 91.5 1e-13 >seq10 Length=4880875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 || || || || ||||| |||||| | || | || ||||| ||||| ||||||| || Sbjct 829458 GGAATTCCTCCTGATCAACAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACGA 829517 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | | || |||||||| || || ||||||||||| |||| | ||| | ||||||||| Sbjct 829518 ACTTTGAGTGATTACAACATCCAGAAAGAATCCACTCTTCACCTTGTGCTTAGATTGAGA 829577 Query 25397 GGAGG 25401 ||||| Sbjct 829578 GGAGG 829582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445087322999040