Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq964 168 9e-37 seq1212 127 3e-24 >seq964 Length=50745 Score = 168 bits (186), Expect = 9e-37 Identities = 340/499 (68%), Gaps = 8/499 (2%) Strand=Plus/Minus Query 163026 AGGGT-TGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTTA 163084 ||||| |||| || || |||||||| || | || || |||||||| || ||||||| Sbjct 24313 AGGGTCTGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTA 24254 Query 163085 AAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTAC 163144 || | ||||| ||||| | | | || ||||| || | || ||||||||||||| Sbjct 24253 AAGTGAAGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTAC 24194 Query 163145 TTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGTT 163204 | || || || ||||| | || | || |||||||||||| |||| || ||||||| Sbjct 24193 TGGGTGCTTACTATGGGACTGGCAGCAAAGGTGGAATGATGTCTGTGTTCCTGATGGGGG 24134 Query 163205 GCTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAA---TGTTCCGGACACGATG 163261 |||||||| || | ||| || || |||||| | ||||| |||| Sbjct 24133 TTTATGATGAAAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATG 24074 Query 163262 ATAATACGTT--AAGGGTTCTACAAGACCAATTAAAGATGATTAAAATTAGTAAGGATCC 163319 || | || || | | | |||| || | | |||| ||| ||||| || || ||| Sbjct 24073 ATGAGACATTGGAGAAGATAAACAA-ACAACTGAAAGTTGA-GAAAATAAGCAAAGATAT 24016 Query 163320 aaaaaaaGTACCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCAGATTTTGTAGCAGA 163379 || | ||||||| |||||||| | ||||||| || | |||||||| || | || Sbjct 24015 GAAGAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGC 23956 Query 163380 GGATCCAAAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAATC 163439 || ||||| | | || | |||||||| | || ||||||| || ||| | || Sbjct 23955 TGACCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTC 23896 Query 163440 TCATACAGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATCAGAAATGATAA 163499 |||||| ||| | ||||| || || |||||||| ||| |||| | ||| |||| ||||| Sbjct 23895 TCATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAA 23836 Query 163500 AACGTGGAAAGAATCAACT 163518 | |||||| | ||||| Sbjct 23835 GAACTGGAAAACAGCAACT 23817 >seq1212 Length=378467 Score = 127 bits (140), Expect = 3e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||| ||||| || || || ||||||||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAG 39815 ||| || || ||| | || | | ||| || |||||||| | ||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | ||||| ||||| |||| || || || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 |||||| | ||||| ||| |||||| | |||| || |||||| || ||||| || | Sbjct 239571 TTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCAGAATGTATAT 239630 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 | ||||| || ||||||||||| || ||| ||||||| || || ||||| || || Sbjct 239631 TCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGAACTTC 239685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897878150080